Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0253 ATGAGCTCGAGGCGCAGCCGCGGAAGTTGCCCAGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCCGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGCTTCTACATATTCCTGAACACAAACGGCTCGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGCTGCAAGGTTGCAAGTAGAGATCTCGTATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCAAGCTTCACGGCCAAAGTTGCAGTCTCCCTTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGAGCAGCATTGATCAACAAATCGTCCAAAAACAACTGGCCTCAATGCAACACATTGGTGCCTCGCTATTTCCGTGCGTCCCTAAAGGAGCCTAA 678 49.71 MSSRRSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAYLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSPLELSQIGSNSFPSMSSIDQQIVQKQLASMQHIGASLFPCVPKGA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2483260 2484216 - CaPI482276_05g002530.1 Cam05g0253 125657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0253 225 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 149 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cam05g0253 225 ProSiteProfiles LOB domain profile. 17 119 IPR004883 -
Cam05g0253 225 Pfam Lateral organ boundaries (LOB) domain 18 116 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0253 Cam-Chr5:2483260 Cam06g0194 Cam-Chr6:3766241 2.30E-54 dispersed
Cam07g0344 Cam-Chr7:4628000 Cam05g0253 Cam-Chr5:2483260 5.30E-35 transposed
Cam09g0786 Cam-Chr9:7981934 Cam05g0253 Cam-Chr5:2483260 5.80E-35 transposed
Cam10g1558 Cam-Chr10:29261220 Cam05g0253 Cam-Chr5:2483260 8.90E-33 transposed
Cam05g0253 Cam-Chr5:2483260 Cam06g0193 Cam-Chr6:3747938 7.50E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51849 PF03195 LOB 1.40E-36 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0253 K21994 - csv:101216934 393.66