Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0256 ATGGAAGAGAGAGAAGCCATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACCGAGAACCCGCCGGCCGGCGGCGGTTCGCCAACCGTCGCTGCCTCGCCGGTAAGCGTGGGGCTGCCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAGTACGGCCCGGATGGAACGGTAACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCAGCCGGTGGCTTCTCCATTACCAAGCGGGGGAAGGGCCGGCTCGGCGGGTCCGAATTCAAACATCACAAGAAAATGGGAATGGAATATATAGGAGAGTGGAATGCGTGTTCTGTTGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGCCCTCGAGCAATCTGTATTCTTTCTGCTAATGGAGTAATTTCGAATGTCACTCTTCGGCAGCCGGATTCTTCGGGTGGTACTTTAACATATGAGGGCCGTTTTGAAATACTTTCTTTATCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCTAGCCCTGATGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTTGGGAGTTTTCTACCAACTAGCCAACAGGAACAGAAGGTAAAGAAACAGAAGCCCGAGTCGGTACCAGCTGCAGCCCCTGTTGCAGTCCCGAGCACGGCACTAGCCACGACTGTGCCAGCTTCGAATGCAGATACAGATGACAGTTTAAATGGGAATGGTCTGCAAAATGCCGGGTCGTTAAAACCGGCCAGTTTTGCTCCTTCACCTTTCCAGAGAGACAATTGGGGTACCAATGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATTTCGCTGCCAGGCTAA 1026 52.14 MEEREAINAGVTVIGAEAPSAYHVAPRTENPPAGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVAVPSTALATTVPASNADTDDSLNGNGLQNAGSLKPASFAPSPFQRDNWGTNAAVHSLQEPRNSATDINISLPG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2510548 2514692 + CaPI482276_05g002560.1 Cam05g0256 125660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0256 341 Gene3D - 131 260 - -
Cam05g0256 341 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Cam05g0256 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
Cam05g0256 341 CDD DUF296 131 244 IPR005175 -
Cam05g0256 341 MobiDBLite consensus disorder prediction 248 267 - -
Cam05g0256 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 250 - -
Cam05g0256 341 MobiDBLite consensus disorder prediction 18 71 - -
Cam05g0256 341 MobiDBLite consensus disorder prediction 280 303 - -
Cam05g0256 341 ProSiteProfiles PPC domain profile profile. 126 266 IPR005175 -
Cam05g0256 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 287 IPR039605 GO:0003680(InterPro)
Cam05g0256 341 MobiDBLite consensus disorder prediction 280 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0355 Cam-Chr1:3974678 Cam05g0256 Cam-Chr5:2510548 3.90E-90 dispersed
Cam04g0996 Cam-Chr4:24115383 Cam05g0256 Cam-Chr5:2510548 3.60E-16 dispersed
Cam05g0256 Cam-Chr5:2510548 Cam11g0045 Cam-Chr11:2032285 1.90E-76 dispersed
Cam05g0248 Cam-Chr5:2445376 Cam05g0256 Cam-Chr5:2510548 3.60E-17 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0256 - - - 0.0