Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0275 ATGCCCTTCCCCGTCGCTACCTTTCTACTCCTCTTCTTACCCCTGGTAGTGGTGGCTTCCTCTATTTCTTCGTTGCCCGAGCTTGACCCGGTTCGGTTGGCCCAGACCGGGGTTGCGGAAGCCAGAACCGAAATAGGTAAGTTAAAACGACGTCGATTTGGGCTTGGCGATTGCTCTACGCTCTACGAGGAGGCGGACTGGCGGCTCGCCGGGATATTGGTTGGAGAGAATTATACGGCGGAAGATGCTCGGGCGTGGCTTAGCGCCGCCGTGGCTAACCATCGGAGTTGTTTGGATGGCTTGGAAGAGGTTGGTGCCGCGACGGCGGTGGAATATGGGAATAACTTGACCGTGATGCTCACCGGAGCTCTCCATTTATACGACAAGATTGCTGCCGTGGAGAAGCGGAAGGGAAGGGAAGTAGTGAAGAAACAGAAATGGAGAGAAAACAGAGGAATGGACTTGGCGAAGTGGAATCCGGTGACCTCGAAGGCAGACTACGTGGTGGCGAAAGACGGGTCCGGCACCCACACAACCATAAACGGGGCGGTGGCGACTCTGGCGAGGACTGGACGGAGACGGCGGGGGGAGAGAATTGTGATATACGTGAAAGCCGGTGTTTACAAGGAAAATGTGGAAATTGGAATACAGTTGAAGAACGTCATGGTTGTTGGTGACGGCGCAGACAAAACCATCGTCACCGGTAGCCGCAACGTGCCCGACGGTGCCACCACTTATAACTCAGCTACATTTGGTGTTTCCGGCGACGGATTTTGGGCGAGGGACATAACTTTCGAGAACACAGCCGGACCGGAAAAGCAACAGGCGGTGGCGCTACGGCTGAATTCAGACCTTGCCGTCGTATATCGGTGCGCAATAAAAGGTTATCAGGACACGCTCTTCCTCCACTCCCTCCGCCAATTCTACCGCGACTGCCAAATCTACGGCACCATCGATTTCATTTTCGGGAACTCCGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGACGACCGATTCGCCACCAGGCTAACATGATCACCGCCCAAGGTCGCGACGATCCGGCCGAGCTCACCGGAATTTCCATCCTCAACTCCAGAGTCCAGCCGGCGCCGGATTTCGCACCCGTAAAGGCTCAATATAGAACCTACCTCGGCCGCCCGTGGAAGCGGTTTTCGAGGACGGTGGTTATGGCGACAGATTTGGACGGATTGATCGATCCGAAAGGGTGGGGAGAATGGAGGGGGGATTTTGCGATTTCGACTTTGTTCTATGCAGAGTTTAAGAACAGGGGCGGCGGTTCTTCGACGAGATTTAGGGTTAATTGGCCGGGGTTTCACGTCCTCCATAGCGCGGAGGAGGCGCGACCTTTCACGGTGGCTGAGTTTCTTCACGGCGGCGCTTGGATTCCGGCCACCGGCGTACCCTTCGAGGCGGGCGTTTGA 1446 56.09 MPFPVATFLLLFLPLVVVASSISSLPELDPVRLAQTGVAEARTEIGKLKRRRFGLGDCSTLYEEADWRLAGILVGENYTAEDARAWLSAAVANHRSCLDGLEEVGAATAVEYGNNLTVMLTGALHLYDKIAAVEKRKGREVVKKQKWRENRGMDLAKWNPVTSKADYVVAKDGSGTHTTINGAVATLARTGRRRRGERIVIYVKAGVYKENVEIGIQLKNVMVVGDGADKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCAIKGYQDTLFLHSLRQFYRDCQIYGTIDFIFGNSAAVLQNCEIFVRRPIRHQANMITAQGRDDPAELTGISILNSRVQPAPDFAPVKAQYRTYLGRPWKRFSRTVVMATDLDGLIDPKGWGEWRGDFAISTLFYAEFKNRGGGSSTRFRVNWPGFHVLHSAEEARPFTVAEFLHGGAWIPATGVPFEAGV 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2658068 2661280 - CaPI482276_05g002750.1 Cam05g0275 125679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0275 481 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 130 IPR035513 -
Cam05g0275 481 Gene3D - 160 481 IPR012334 -
Cam05g0275 481 PANTHER PECTINESTERASE 51 472 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam05g0275 481 Pfam Plant invertase/pectin methylesterase inhibitor 32 107 IPR006501 GO:0004857(InterPro)
Cam05g0275 481 FunFam Pectinesterase 160 481 - -
Cam05g0275 481 Pfam Pectinesterase 167 466 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam05g0275 481 SUPERFAMILY Pectin lyase-like 162 479 IPR011050 -
Cam05g0275 481 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 114 IPR035513 -
Cam05g0275 481 ProSitePatterns Pectinesterase signature 2. 314 323 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0275 Cam-Chr5:2658068 Cam05g0874 Cam-Chr5:7890130 3.90E-107 dispersed
Cam05g0275 Cam-Chr5:2658068 Cam05g0276 Cam-Chr5:2673426 9.30E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0275 K01051 - csv:101217635 795.423