Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0314 GACTATTTGGAAACAATCTATAAAGCACTGACACTTCGAAACTGGCAGAGTGTCGGTGTCGGACACGTGTCTGACATGCCAGCTGCAAATGAAAAGGATATACACGTAACCATGAATGAAGCAGTTCCAAAAATTTTGCATTGGATCACCATCTTCAAAAGCCCAATGGGTTCTAAAGCACCTAATGTTGAGTTTAAATCTGAGGATGGTCCCAGGAAAGTTAGTATATCGGAGGTGATTGATATCGAGGAGATGGCATGGGCTCCAAAATATGGTTTGAAAGGAATGATTGATGCTTCTGTCAGGGTAAACATAATGTCAAATTATAGTAAATGTGCCGAGAATGTCATGCCTTTAGAGTTTAAAACCGGAAAGGTGCCAGCTGGTCAGTCCTCCATGGAACATTGTGCCCAAGTGATCTTGTACACTCTACTTATGTCCGAGAGGTATCACAAACATGTTGGTTATGGTCTCCTTTATTATCTCCGGTCGGATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATTCTCAAGGCATCAACTGCACAATTACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGTACCATTTATCATAAGATGCAAAATGGGAGCAAAGAGACCAGTGGGCTTGGAGTTTTATTTGACTCCCATACAGATCACTTGAAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCCAAGGAGACGGAGATTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGCAGAGAAAAATCAAATGTCTACCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCTGCTATCGTTTTGTGCGTCAAGATATGCCTTCTCTGTGTTTGAAAGATTCAAATGATGGTAGTTCAAACACTGCTTTGATAAGTGACATGGACAGTTCACTTAGAGTTGGAGACTATGTGATACTTAGTACAGATTCTGGGCACTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGCCTCCATATATCCGTTTCTTTTTCTAAGCGCCTACGTTTGCCTGGAAGCACTTCTTCTACAGAAGCACATGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTTGTACAACTGTTTCTGCAAGGTGAACAAAATGCTCATCTTAGAAAGTTGATTGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATTTTACATCTGGTCAGAGAAGAATTTAAATGATGACCAACGACGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCTCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCTACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCCATTTTGCTCACGTCTTACACAAACACTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATTAATGCAGTGCACGAAGACGTTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGTGTGGAAGACATCAGAATGAGATTGGACCAAGTGAAAGTTGTTGCAGTTACTTGTTTAGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGACGAAGCTGGACAGACCACCCTTCCAGTTTCGCTTGGGCCTTTGATGTTTGCTTCAACATTTGTCCTTGTTGGCGATCACTATCAACTACCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCCGCATTGCAAAGCCAGTATCGCATGTGCCGAGACATTATGGAATTATCAAACGCCTTAATATATGGAGACAGATTGCGTTGTGGTTCTGCAGAAACCGCGAACGCAAAGCTTGAACTTTCAAGAACAAAGTTGTGTTCATCTTGGCTTAAGGAGGTTCTAAACCCATCCAAACCAGTTATCTTTGTTTGTACAGATTTATTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAACCCAACTGAGGCTAGCATAGTAGCAGAGGTGACGAAGGGATTGCTTGATGGTGGAATTAAGGGGAATGAAGTTGGCATCATTACCCCGTATAACGCCCAGGCAAGCATCATTCGTCTAGCTATCAACATAGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGTAGAGATAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGTGAAAATCCAAAGAGCTGTACTACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATTACCCGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCACTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATCTTGAGTGTTCGTCTCGGGGGTTGTGTATCAAATGCCATGTGGGAAGCACTGAGAAAAAATGTTGTCTACTTGCGGAAAAGGCCATGGACAAGAAGGGTTGGAAAGGATGGAAGAGAGGAGCACATTTGA 2724 42.18 DYLETIYKALTLRNWQSVGVGHVSDMPAANEKDIHVTMNEAVPKILHWITIFKSPMGSKAPNVEFKSEDGPRKVSISEVIDIEEMAWAPKYGLKGMIDASVRVNIMSNYSKCAENVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYHKHVGYGLLYYLRSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFDSHTDHLKASHGIFFQHWERLIDLEAKETEIVKRGVWHSRSAEKNQMSTCLSSIVLSTLDDQPHCTFEKDNRICYRFVRQDMPSLCLKDSNDGSSNTALISDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHISVSFSKRLRLPGSTSSTEAHDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAIFYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFIRIGRINAVHEDVRSHCFSELNIQSVEDIRMRLDQVKVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSAETANAKLELSRTKLCSSWLKEVLNPSKPVIFVCTDLLPAYETRDHKIVNNPTEASIVAEVTKGLLDGGIKGNEVGIITPYNAQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILSVRLGGCVSNAMWEALRKNVVYLRKRPWTRRVGKDGREEHI 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2965353 2979731 - CaPI482276_05g003140.1 Cam05g0314 125718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0314 907 PANTHER DNA2/NAM7 HELICASE FAMILY 139 861 IPR045055 GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER)
Cam05g0314 907 CDD DEXXQc_DNA2 466 666 IPR026851 GO:0017116(InterPro)
Cam05g0314 907 FunFam DNA replication helicase Dna2 63 220 - -
Cam05g0314 907 CDD SF1_C_Upf1 667 860 IPR047187 -
Cam05g0314 907 Gene3D - 665 872 IPR027417 -
Cam05g0314 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 852 IPR027417 -
Cam05g0314 907 Pfam DNA replication factor Dna2 30 103 IPR014808 -
Cam05g0314 907 Gene3D - 394 664 IPR027417 -
Cam05g0314 907 Pfam AAA domain 643 843 IPR041679 -
Cam05g0314 907 FunFam DNA replication helicase 665 875 - -
Cam05g0314 907 Gene3D - 38 220 IPR011604 -
Cam05g0314 907 Pfam AAA domain 567 634 IPR041677 GO:0004386(InterPro)
Cam05g0314 907 Pfam AAA domain 466 558 IPR041677 GO:0004386(InterPro)
Cam05g0314 907 FunFam DNA replication helicase Dna2 401 664 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0314 Cam-Chr5:2965353 Cam10g1680 Cam-Chr10:30796732 1.20E-43 dispersed
Cam10g0195 Cam-Chr10:3602390 Cam05g0314 Cam-Chr5:2965353 2.90E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0314 K10742 - csv:101220726 1535.01