Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g0338 | ATGTCTTTCAATCAATCAAGGCATGATAAGAATGAGGATCCTCAGTTTAAGAAATCTGGCCGATCGTCGAGCTTCAATCAACAGAAAATCTCTTGTGAACTTCATTCTAAGCCGGGCGATTCCGGCAGGTATGCGCCGCCGATCGTCTCCAACCATAGTGTTAAGCAGTCTAACGATGCGCAACAAGCACGGAAAACTAGGGCTGGTGTATCCTCTGTAAGTTCTACCGTTTCTACTACCCCTCGGGAAGGGCAAAACGGTTCTCATGTGCAGCCGCAACAGAATGGTTCAGCATCCAATCCAGTAAAATTGTCAGGATCCCAAAGCGGGGTTGTTAAAAAAAATGCAACTTCTCGAACGGCCTCCAAGACTTCTGATGCATTTTTAGAATCCAAGAGCGGAATTGTTCAAAATAATGCGACTTCTAAGCCTACCTCAAAAACTTTCGGCACTACCTCCTTTAAAGACCTGGGGGAACAGCATATGACGTTTCCACTTCAATTTGGATCCTTAAGTCCTGGTTTCCAGATTCCTAGGACCAGCTCAGCTCCTTCGAATCTGCAAGAACAGATATTGAACCAGGCACCACGCCATGTGTTTAAATCTGTACCTTCAGGGTCAGTGCAGCCAGTACCCAGACAACCAATAGCAAACAATGATTCCAGTGTCTGTGATCAACCAAATATTGGAACGTCCAATCCAGAGCCAGAGACCAAAAAGGAGATGCAAGTCTCGTCAGGAGCACCCGTAAGCCAGATTCAGAAGCCTTCCCATGTATCATTTGTTAGTCACAGAGCTTCTATTTCCCTCCCTGACGCAGCAAAGCATGTGGCAATGCAGTCTCTTCCTGGGTCTTTGACGCAGGTCATCTACTCATGTCCTAAAGAAAGCCTATCTAAGTCCAACTCAATTAAGGCCGATAACAAAGTATCCGGCAAGAAAGGACCGATCCAACTGCTGCATCAGGTTGAGGTTGCAGATCCCATTTTTTATACTAAGCTGGAATCCTCTTTGCAATTCGAGCAATCAAAGCATGAGCTCATTGGAACAGAAAAGGTAGGAGCAAGATCGCCTGATTCTCAAGATAACATAGAACAAAGTAAACCACCATCTTGTATGAAGCCAACGGCAATTAATAACGGCAATTCAACGTCAAAAACACTGAAAGAAGTTGGCAGTACAAACGACAATAATGTTCTTTCTAACTCCATAACTCATGGTTGTAAGACTTCACCTATTATCATATCTTCTTGTCAAAGCGATAGTAACACTATCGATGATACTGTAGTTTGCCGAGCTGATCTGCAATCTCCTCTTGTTGAAACGTCTGACCTCTCAGAGATAAAGCAGGATGGAGATAGAATAGAGCACACAGGTGGTCAATGTGACCCTAATTTTAGACCCTTTATTGAAGATAAATCTGTCATAGACATAAATAAGATGAGGAATAGGTCGAAGAAGAAGAGGAAGGAAATTCTTCGGAAGGCAGATGCTGCTGGGACTATTTCCGACCTTTATATGGCATATAAAGAACCTGAAGAGAAGAAAGAGACTACTATCTCTGCAGAAAGCTCCAATGGGAGCATAAATATGAAACACGAGTCTGCTGGTTCCTTTAAGGAAGAGGCTGCCTTGACCAAGAAGGATGTTCAGGATAAACTCGAGCCAGATGATTGGGAAGATGCAGTTGATAATTCTACTGATACATTGAAATACGAGGGTGGTTTTGAGGATAAGGCCAACGGAAAAGTAGCATTGCACCTCGAGGATGGGAGTAGAGATCTGGCCAAAAAGTACTCCAGAGATTTCCTCCTGAAATTCGCCGAGCAGTTCATGGACCTTCCTGATGGGTTTGAAGTTTCTCCCAACATGAAGGCTTTAATGAGTAACCATGGCTCTCGTTCTGTCAATAGTAATTCACCTGCTAATCATGGAAAAATGGATAAGCCAAGTGGAGGGTCTCGACTTGATCATCGTGCTATTACTGTGGATGACAGACTATTTGCTTCAGGGCGGCATTCGCACTTGGATAGCACTCGACCTACTCAAGGTGCTAACAATAGTGCTGTAAAGACCCCTTGGGCGCACACCGGTTCACAGGGAAAGATCCAAAGAAATGGCTCCAATACTGATAGGTGGCAAAGAGATGCTAGTTTTCAGCTGAAAGGTATAATTTCTCCTTCAACTCCATCACAGGTGATGCACAGAGCCGAGAAGAAATATGAAGTGGGTAAAGTGGCTGACCAGGAAGAGACCAAACAAAGGCAGCTGAAGGCTATACTAAACAAGCTAACTCCACAAAATTTTGAAAAACTCTTTGAACAAGTGAAAGCAGTTAATATTGATAGTTCGAAGACACTAAGTGGTGTCATCTCTCAGATATTTGACAAAGCTCTGATGGAGCCTACTTTCTGTGAAATGTATGCCAATTTTTGTCTCCATCTGGCTGGCGAGTTACCTGATTTTAGCGATGATAATCAGAAGATTACTTTTAAGAGGTTGCTTTTAAACAAATGCCAAGAGGAATTTGAGAAAGAGCAGGAAGAAAATGATGAAGTTAATAAGGTCGGTGAGATGAAACAGTCTGCAGAGGAACGAGAAGTGAATAGAATAAAGGCGCGCAGAAGAATGCTTGGCAACATTAGGTTAATTGGGGAGCTTTACAAGAAAAAGATGATAACAGAGAAAATTATGCATGTATGCATCAAGAAATTGTTAGGTCAGTACCAAAATCCGGATGAGGAAGATATTGAAGCATTATGCAAATTGATGACCACTATAGGAGAGATGATAGATCACCCCAAAGCTAAGGAGCATATGAATGCATATTTTGAGATGATGACTAAATTATCTAATAACATGAAGCTGTCATCTAGAGTTAGATTCATGTTGAAGGATGCAATTGATTTGAGAAAGAATAAATGGCAACAGAGGAGAAAAATTGAAGGACCTAAAAAAATTGATGAAGTGCACAGGGATGCTGTGCAAGAACGTCAAGCGCAAGCTAGTAGATTAAGCCGTGGTCCTGGAATCAGTGCACCATTGAGGAGGGGAACATCCATGGATTTTGGTTCAAAAGCGCCTGCATTATTGCCTTCTCCCAATGCCCAGATTGGTGGTTTTCACGGTTTTTCAACCCAGAATTGTGGTTCAAGCAGTCAAGACGCTCGTTTTGAAGGTAAACTACGGTCTCCTGAGGCCAAGGCATTTCCAACCCCATTGCCCCAAAGACCTATCAGTGATGATGCTATCACTTTAGGTCCCCAGGGTAGTTTAGCTAGAGGAATGTCCATTAGAGGGTCAAGATCCATTTCATCCAATTCATTAGTAGATTTGTCCTTGCCGACTGGTAATAACTGCCAAAGAATGGTAGCTGCTTTAAATCCTCATGGCTTTGTATCAGAGCATGCAATTTCCAACTCCAGAGGGGACATCCCTTCAAGAAAATTTTCAAAGGGAACTCTAGGTTCAGAATCCTTCGATCAGGCGACGAGTACACTGGAACCTGGTATTAGTTTTGGATCTAGGCAAAGGGGAAACGTTGATAGCGGTCTTGGGAGGTCTCAGCCGACCAAATATGAACAACCAGCTTTGACTACGAATGGCCATTCTGAGGTTACGTCCAAAGAACATCTACGAGATAAGTCCATAGCAGCTATTAGGGAATATTACAGTGCTAGAGATGAGAAGGAAGTTACCCTGTGCATCAAGGACTTGAATTCGCCTGAATTCCATTCATCCATGATTTCTCTTTGGGTCACAGACTCCTTTGAGAGAGAAAACACAGAAAGGGATCTTTTAGCTAAACTTCTTGTTAGCCTCACCAAATCAAAGGATGATACATTGACTCAACTCCAACTTCTCAAAGGAATCCAGCTCGTTGTTGCCACACTGGAGGATGCTGTGAATGATGCCCCAAAAGCTCCAGAATTTATGGGCCGATTACTCGCTAACTTGGTGGTGGAAAACTTGATTTCATTGAAAGAAATCGGGAAGTTTATATATGAAGGTGGAGAGGAGGCTGGAAAGCTTCTACAAGTTGGGCTTGCAGCTGATGTTCTTGGCAACGTGCTGGAAGTAGTTCAATTGGAGAAAGGTCAGATTTTCTTGAACGAAATTCTTAAATGTTCTGATCTACAATTAGAAACATTTCGCCCTTCATACCCAATCAAATCGACAAAGTTAGAGAAATTTATTTAG | 4200 | 42.71 | MSFNQSRHDKNEDPQFKKSGRSSSFNQQKISCELHSKPGDSGRYAPPIVSNHSVKQSNDAQQARKTRAGVSSVSSTVSTTPREGQNGSHVQPQQNGSASNPVKLSGSQSGVVKKNATSRTASKTSDAFLESKSGIVQNNATSKPTSKTFGTTSFKDLGEQHMTFPLQFGSLSPGFQIPRTSSAPSNLQEQILNQAPRHVFKSVPSGSVQPVPRQPIANNDSSVCDQPNIGTSNPEPETKKEMQVSSGAPVSQIQKPSHVSFVSHRASISLPDAAKHVAMQSLPGSLTQVIYSCPKESLSKSNSIKADNKVSGKKGPIQLLHQVEVADPIFYTKLESSLQFEQSKHELIGTEKVGARSPDSQDNIEQSKPPSCMKPTAINNGNSTSKTLKEVGSTNDNNVLSNSITHGCKTSPIIISSCQSDSNTIDDTVVCRADLQSPLVETSDLSEIKQDGDRIEHTGGQCDPNFRPFIEDKSVIDINKMRNRSKKKRKEILRKADAAGTISDLYMAYKEPEEKKETTISAESSNGSINMKHESAGSFKEEAALTKKDVQDKLEPDDWEDAVDNSTDTLKYEGGFEDKANGKVALHLEDGSRDLAKKYSRDFLLKFAEQFMDLPDGFEVSPNMKALMSNHGSRSVNSNSPANHGKMDKPSGGSRLDHRAITVDDRLFASGRHSHLDSTRPTQGANNSAVKTPWAHTGSQGKIQRNGSNTDRWQRDASFQLKGIISPSTPSQVMHRAEKKYEVGKVADQEETKQRQLKAILNKLTPQNFEKLFEQVKAVNIDSSKTLSGVISQIFDKALMEPTFCEMYANFCLHLAGELPDFSDDNQKITFKRLLLNKCQEEFEKEQEENDEVNKVGEMKQSAEEREVNRIKARRRMLGNIRLIGELYKKKMITEKIMHVCIKKLLGQYQNPDEEDIEALCKLMTTIGEMIDHPKAKEHMNAYFEMMTKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKIEGPKKIDEVHRDAVQERQAQASRLSRGPGISAPLRRGTSMDFGSKAPALLPSPNAQIGGFHGFSTQNCGSSSQDARFEGKLRSPEAKAFPTPLPQRPISDDAITLGPQGSLARGMSIRGSRSISSNSLVDLSLPTGNNCQRMVAALNPHGFVSEHAISNSRGDIPSRKFSKGTLGSESFDQATSTLEPGISFGSRQRGNVDSGLGRSQPTKYEQPALTTNGHSEVTSKEHLRDKSIAAIREYYSARDEKEVTLCIKDLNSPEFHSSMISLWVTDSFERENTERDLLAKLLVSLTKSKDDTLTQLQLLKGIQLVVATLEDAVNDAPKAPEFMGRLLANLVVENLISLKEIGKFIYEGGEEAGKLLQVGLAADVLGNVLEVVQLEKGQIFLNEILKCSDLQLETFRPSYPIKSTKLEKFI | 1399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3176825 | 3183135 | + | CaPI482276_05g003380.1 | Cam05g0338 | 125742 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g0338 | 1399 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 102 | 1388 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER) | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 675 | 711 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 50 | 125 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 203 | 241 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 514 | 537 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 207 | 241 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 1153 | 1205 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 1153 | 1210 | - | - | |
Cam05g0338 | 1399 | FunFam | Eukaryotic translation initiation factor 4G | 1205 | 1398 | - | - | |
Cam05g0338 | 1399 | SUPERFAMILY | ARM repeat | 1208 | 1389 | IPR016024 | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 352 | 394 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 356 | 394 | - | - | |
Cam05g0338 | 1399 | SMART | if4_15 | 754 | 974 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cam05g0338 | 1399 | SUPERFAMILY | ARM repeat | 748 | 976 | IPR016024 | - | |
Cam05g0338 | 1399 | SMART | ma3_7 | 1212 | 1326 | IPR003891 | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 673 | 711 | - | - | |
Cam05g0338 | 1399 | Gene3D | - | 754 | 987 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 847 | 867 | - | - | |
Cam05g0338 | 1399 | ProSiteProfiles | MI domain profile. | 1211 | 1335 | IPR003891 | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 997 | 1016 | - | - | |
Cam05g0338 | 1399 | Coils | Coil | 836 | 856 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 629 | 656 | - | - | |
Cam05g0338 | 1399 | Pfam | MIF4G domain | 755 | 974 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cam05g0338 | 1399 | MobiDBLite | consensus disorder prediction | 629 | 645 | - | - | |
Cam05g0338 | 1399 | Gene3D | - | 1203 | 1399 | - | - | |
Cam05g0338 | 1399 | FunFam | Eukaryotic translation initiation factor 4G | 754 | 987 | - | - | |
Cam05g0338 | 1399 | Pfam | MA3 domain | 1213 | 1325 | IPR003891 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0338 | Cam-Chr5:3176825 | Cam06g0947 | Cam-Chr6:14309509 | 2.20E-275 | dispersed | |
Cam05g0338 | Cam-Chr5:3176825 | Cam06g1387 | Cam-Chr6:25305498 | 5.50E-53 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g0338 | K03260 | - | csv:101222372 | 2163.27 |