Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0338 ATGTCTTTCAATCAATCAAGGCATGATAAGAATGAGGATCCTCAGTTTAAGAAATCTGGCCGATCGTCGAGCTTCAATCAACAGAAAATCTCTTGTGAACTTCATTCTAAGCCGGGCGATTCCGGCAGGTATGCGCCGCCGATCGTCTCCAACCATAGTGTTAAGCAGTCTAACGATGCGCAACAAGCACGGAAAACTAGGGCTGGTGTATCCTCTGTAAGTTCTACCGTTTCTACTACCCCTCGGGAAGGGCAAAACGGTTCTCATGTGCAGCCGCAACAGAATGGTTCAGCATCCAATCCAGTAAAATTGTCAGGATCCCAAAGCGGGGTTGTTAAAAAAAATGCAACTTCTCGAACGGCCTCCAAGACTTCTGATGCATTTTTAGAATCCAAGAGCGGAATTGTTCAAAATAATGCGACTTCTAAGCCTACCTCAAAAACTTTCGGCACTACCTCCTTTAAAGACCTGGGGGAACAGCATATGACGTTTCCACTTCAATTTGGATCCTTAAGTCCTGGTTTCCAGATTCCTAGGACCAGCTCAGCTCCTTCGAATCTGCAAGAACAGATATTGAACCAGGCACCACGCCATGTGTTTAAATCTGTACCTTCAGGGTCAGTGCAGCCAGTACCCAGACAACCAATAGCAAACAATGATTCCAGTGTCTGTGATCAACCAAATATTGGAACGTCCAATCCAGAGCCAGAGACCAAAAAGGAGATGCAAGTCTCGTCAGGAGCACCCGTAAGCCAGATTCAGAAGCCTTCCCATGTATCATTTGTTAGTCACAGAGCTTCTATTTCCCTCCCTGACGCAGCAAAGCATGTGGCAATGCAGTCTCTTCCTGGGTCTTTGACGCAGGTCATCTACTCATGTCCTAAAGAAAGCCTATCTAAGTCCAACTCAATTAAGGCCGATAACAAAGTATCCGGCAAGAAAGGACCGATCCAACTGCTGCATCAGGTTGAGGTTGCAGATCCCATTTTTTATACTAAGCTGGAATCCTCTTTGCAATTCGAGCAATCAAAGCATGAGCTCATTGGAACAGAAAAGGTAGGAGCAAGATCGCCTGATTCTCAAGATAACATAGAACAAAGTAAACCACCATCTTGTATGAAGCCAACGGCAATTAATAACGGCAATTCAACGTCAAAAACACTGAAAGAAGTTGGCAGTACAAACGACAATAATGTTCTTTCTAACTCCATAACTCATGGTTGTAAGACTTCACCTATTATCATATCTTCTTGTCAAAGCGATAGTAACACTATCGATGATACTGTAGTTTGCCGAGCTGATCTGCAATCTCCTCTTGTTGAAACGTCTGACCTCTCAGAGATAAAGCAGGATGGAGATAGAATAGAGCACACAGGTGGTCAATGTGACCCTAATTTTAGACCCTTTATTGAAGATAAATCTGTCATAGACATAAATAAGATGAGGAATAGGTCGAAGAAGAAGAGGAAGGAAATTCTTCGGAAGGCAGATGCTGCTGGGACTATTTCCGACCTTTATATGGCATATAAAGAACCTGAAGAGAAGAAAGAGACTACTATCTCTGCAGAAAGCTCCAATGGGAGCATAAATATGAAACACGAGTCTGCTGGTTCCTTTAAGGAAGAGGCTGCCTTGACCAAGAAGGATGTTCAGGATAAACTCGAGCCAGATGATTGGGAAGATGCAGTTGATAATTCTACTGATACATTGAAATACGAGGGTGGTTTTGAGGATAAGGCCAACGGAAAAGTAGCATTGCACCTCGAGGATGGGAGTAGAGATCTGGCCAAAAAGTACTCCAGAGATTTCCTCCTGAAATTCGCCGAGCAGTTCATGGACCTTCCTGATGGGTTTGAAGTTTCTCCCAACATGAAGGCTTTAATGAGTAACCATGGCTCTCGTTCTGTCAATAGTAATTCACCTGCTAATCATGGAAAAATGGATAAGCCAAGTGGAGGGTCTCGACTTGATCATCGTGCTATTACTGTGGATGACAGACTATTTGCTTCAGGGCGGCATTCGCACTTGGATAGCACTCGACCTACTCAAGGTGCTAACAATAGTGCTGTAAAGACCCCTTGGGCGCACACCGGTTCACAGGGAAAGATCCAAAGAAATGGCTCCAATACTGATAGGTGGCAAAGAGATGCTAGTTTTCAGCTGAAAGGTATAATTTCTCCTTCAACTCCATCACAGGTGATGCACAGAGCCGAGAAGAAATATGAAGTGGGTAAAGTGGCTGACCAGGAAGAGACCAAACAAAGGCAGCTGAAGGCTATACTAAACAAGCTAACTCCACAAAATTTTGAAAAACTCTTTGAACAAGTGAAAGCAGTTAATATTGATAGTTCGAAGACACTAAGTGGTGTCATCTCTCAGATATTTGACAAAGCTCTGATGGAGCCTACTTTCTGTGAAATGTATGCCAATTTTTGTCTCCATCTGGCTGGCGAGTTACCTGATTTTAGCGATGATAATCAGAAGATTACTTTTAAGAGGTTGCTTTTAAACAAATGCCAAGAGGAATTTGAGAAAGAGCAGGAAGAAAATGATGAAGTTAATAAGGTCGGTGAGATGAAACAGTCTGCAGAGGAACGAGAAGTGAATAGAATAAAGGCGCGCAGAAGAATGCTTGGCAACATTAGGTTAATTGGGGAGCTTTACAAGAAAAAGATGATAACAGAGAAAATTATGCATGTATGCATCAAGAAATTGTTAGGTCAGTACCAAAATCCGGATGAGGAAGATATTGAAGCATTATGCAAATTGATGACCACTATAGGAGAGATGATAGATCACCCCAAAGCTAAGGAGCATATGAATGCATATTTTGAGATGATGACTAAATTATCTAATAACATGAAGCTGTCATCTAGAGTTAGATTCATGTTGAAGGATGCAATTGATTTGAGAAAGAATAAATGGCAACAGAGGAGAAAAATTGAAGGACCTAAAAAAATTGATGAAGTGCACAGGGATGCTGTGCAAGAACGTCAAGCGCAAGCTAGTAGATTAAGCCGTGGTCCTGGAATCAGTGCACCATTGAGGAGGGGAACATCCATGGATTTTGGTTCAAAAGCGCCTGCATTATTGCCTTCTCCCAATGCCCAGATTGGTGGTTTTCACGGTTTTTCAACCCAGAATTGTGGTTCAAGCAGTCAAGACGCTCGTTTTGAAGGTAAACTACGGTCTCCTGAGGCCAAGGCATTTCCAACCCCATTGCCCCAAAGACCTATCAGTGATGATGCTATCACTTTAGGTCCCCAGGGTAGTTTAGCTAGAGGAATGTCCATTAGAGGGTCAAGATCCATTTCATCCAATTCATTAGTAGATTTGTCCTTGCCGACTGGTAATAACTGCCAAAGAATGGTAGCTGCTTTAAATCCTCATGGCTTTGTATCAGAGCATGCAATTTCCAACTCCAGAGGGGACATCCCTTCAAGAAAATTTTCAAAGGGAACTCTAGGTTCAGAATCCTTCGATCAGGCGACGAGTACACTGGAACCTGGTATTAGTTTTGGATCTAGGCAAAGGGGAAACGTTGATAGCGGTCTTGGGAGGTCTCAGCCGACCAAATATGAACAACCAGCTTTGACTACGAATGGCCATTCTGAGGTTACGTCCAAAGAACATCTACGAGATAAGTCCATAGCAGCTATTAGGGAATATTACAGTGCTAGAGATGAGAAGGAAGTTACCCTGTGCATCAAGGACTTGAATTCGCCTGAATTCCATTCATCCATGATTTCTCTTTGGGTCACAGACTCCTTTGAGAGAGAAAACACAGAAAGGGATCTTTTAGCTAAACTTCTTGTTAGCCTCACCAAATCAAAGGATGATACATTGACTCAACTCCAACTTCTCAAAGGAATCCAGCTCGTTGTTGCCACACTGGAGGATGCTGTGAATGATGCCCCAAAAGCTCCAGAATTTATGGGCCGATTACTCGCTAACTTGGTGGTGGAAAACTTGATTTCATTGAAAGAAATCGGGAAGTTTATATATGAAGGTGGAGAGGAGGCTGGAAAGCTTCTACAAGTTGGGCTTGCAGCTGATGTTCTTGGCAACGTGCTGGAAGTAGTTCAATTGGAGAAAGGTCAGATTTTCTTGAACGAAATTCTTAAATGTTCTGATCTACAATTAGAAACATTTCGCCCTTCATACCCAATCAAATCGACAAAGTTAGAGAAATTTATTTAG 4200 42.71 MSFNQSRHDKNEDPQFKKSGRSSSFNQQKISCELHSKPGDSGRYAPPIVSNHSVKQSNDAQQARKTRAGVSSVSSTVSTTPREGQNGSHVQPQQNGSASNPVKLSGSQSGVVKKNATSRTASKTSDAFLESKSGIVQNNATSKPTSKTFGTTSFKDLGEQHMTFPLQFGSLSPGFQIPRTSSAPSNLQEQILNQAPRHVFKSVPSGSVQPVPRQPIANNDSSVCDQPNIGTSNPEPETKKEMQVSSGAPVSQIQKPSHVSFVSHRASISLPDAAKHVAMQSLPGSLTQVIYSCPKESLSKSNSIKADNKVSGKKGPIQLLHQVEVADPIFYTKLESSLQFEQSKHELIGTEKVGARSPDSQDNIEQSKPPSCMKPTAINNGNSTSKTLKEVGSTNDNNVLSNSITHGCKTSPIIISSCQSDSNTIDDTVVCRADLQSPLVETSDLSEIKQDGDRIEHTGGQCDPNFRPFIEDKSVIDINKMRNRSKKKRKEILRKADAAGTISDLYMAYKEPEEKKETTISAESSNGSINMKHESAGSFKEEAALTKKDVQDKLEPDDWEDAVDNSTDTLKYEGGFEDKANGKVALHLEDGSRDLAKKYSRDFLLKFAEQFMDLPDGFEVSPNMKALMSNHGSRSVNSNSPANHGKMDKPSGGSRLDHRAITVDDRLFASGRHSHLDSTRPTQGANNSAVKTPWAHTGSQGKIQRNGSNTDRWQRDASFQLKGIISPSTPSQVMHRAEKKYEVGKVADQEETKQRQLKAILNKLTPQNFEKLFEQVKAVNIDSSKTLSGVISQIFDKALMEPTFCEMYANFCLHLAGELPDFSDDNQKITFKRLLLNKCQEEFEKEQEENDEVNKVGEMKQSAEEREVNRIKARRRMLGNIRLIGELYKKKMITEKIMHVCIKKLLGQYQNPDEEDIEALCKLMTTIGEMIDHPKAKEHMNAYFEMMTKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKIEGPKKIDEVHRDAVQERQAQASRLSRGPGISAPLRRGTSMDFGSKAPALLPSPNAQIGGFHGFSTQNCGSSSQDARFEGKLRSPEAKAFPTPLPQRPISDDAITLGPQGSLARGMSIRGSRSISSNSLVDLSLPTGNNCQRMVAALNPHGFVSEHAISNSRGDIPSRKFSKGTLGSESFDQATSTLEPGISFGSRQRGNVDSGLGRSQPTKYEQPALTTNGHSEVTSKEHLRDKSIAAIREYYSARDEKEVTLCIKDLNSPEFHSSMISLWVTDSFERENTERDLLAKLLVSLTKSKDDTLTQLQLLKGIQLVVATLEDAVNDAPKAPEFMGRLLANLVVENLISLKEIGKFIYEGGEEAGKLLQVGLAADVLGNVLEVVQLEKGQIFLNEILKCSDLQLETFRPSYPIKSTKLEKFI 1399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3176825 3183135 + CaPI482276_05g003380.1 Cam05g0338 125742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0338 1399 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 102 1388 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Cam05g0338 1399 MobiDBLite consensus disorder prediction 675 711 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 50 125 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 203 241 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 18 34 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 514 537 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 207 241 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 1153 1205 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 1153 1210 - -
Cam05g0338 1399 FunFam Eukaryotic translation initiation factor 4G 1205 1398 - -
Cam05g0338 1399 SUPERFAMILY ARM repeat 1208 1389 IPR016024 -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 352 394 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 356 394 - -
Cam05g0338 1399 SMART if4_15 754 974 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam05g0338 1399 SUPERFAMILY ARM repeat 748 976 IPR016024 -
Cam05g0338 1399 SMART ma3_7 1212 1326 IPR003891 -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 1 125 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 673 711 - -
Cam05g0338 1399 Gene3D - 754 987 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 847 867 - -
Cam05g0338 1399 ProSiteProfiles MI domain profile. 1211 1335 IPR003891 -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 997 1016 - -
Cam05g0338 1399 Coils Coil 836 856 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 1 17 - -
Cam05g0338 1399 MobiDBLite consensus disorder prediction 629 656 - -
Cam05g0338 1399 Pfam MIF4G domain 755 974 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam05g0338 1399 MobiDBLite consensus disorder prediction 629 645 - -
Cam05g0338 1399 Gene3D - 1203 1399 - -
Cam05g0338 1399 FunFam Eukaryotic translation initiation factor 4G 754 987 - -
Cam05g0338 1399 Pfam MA3 domain 1213 1325 IPR003891 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0338 Cam-Chr5:3176825 Cam06g0947 Cam-Chr6:14309509 2.20E-275 dispersed
Cam05g0338 Cam-Chr5:3176825 Cam06g1387 Cam-Chr6:25305498 5.50E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0338 K03260 - csv:101222372 2163.27