Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0378 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGCGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACGCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCAACCGAGAACTCAAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCCTCGTCGTCGCCATCATCGAGAATAATGACACAGGATCTGAATGATGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCCGCCGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACTGTTATGCCTCGAATAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGTAGCCCAGTTTCCCCAATCAGAGTAGGATCAACTGCCACCGCAATGAAGAGACCCAGACCAGTTTTTAGTCATGGAGATTCAATGGCTCTCGAGGGCAATGCCCGACACGATGTTGAATGGATGATGAGTAATATTGGATGA 948 50.74 MLSGFSQEPAGMYSAIPALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIRVGSTATAMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3480599 3484369 - CaPI482276_05g003780.1 Cam05g0378 125782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0378 315 FunFam Myb family transcription factor 49 107 - -
Cam05g0378 315 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
Cam05g0378 315 Coils Coil 205 225 - -
Cam05g0378 315 MobiDBLite consensus disorder prediction 114 139 - -
Cam05g0378 315 Pfam MYB-CC type transfactor, LHEQLE motif 148 193 IPR025756 -
Cam05g0378 315 Gene3D - 49 108 - -
Cam05g0378 315 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
Cam05g0378 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677(InterPro)
Cam05g0378 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Cam05g0378 315 MobiDBLite consensus disorder prediction 113 139 - -
Cam05g0378 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 28 279 IPR046955 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2160 Cam-Chr1:34344618 Cam05g0378 Cam-Chr5:3480599 9.50E-46 dispersed
Cam02g1942 Cam-Chr2:32518806 Cam05g0378 Cam-Chr5:3480599 4.80E-41 dispersed
Cam05g0378 Cam-Chr5:3480599 Cam10g1350 Cam-Chr10:27048381 2.40E-36 dispersed
Cam05g0378 Cam-Chr5:3480599 Cam09g2321 Cam-Chr9:37620261 9.90E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51854 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0378 - - - 0.0