Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0383 ATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGATTCGACGAGGACGACGAACCTCCCGGTATCGACCCGGTCTACTTCCTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCGGCCGGAGAGGAGGAAGCAGCGGAGACGGGAGGGAGACTAATTGTTGGGGAATTAGAAGAGGAGGATAATTTTAGGAATAATAATAATATTAATAATAACGTTAATAATAATAATAATAATAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACCCATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTCCGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTGTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTTGTACCGGGTAATTTTCCAGGTCATCAAAACGAGGGGCAAATATTGGAAACGACAGCGGAGAGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCCTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGATAGCAAGTGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA 1128 47.78 MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLNNERAEEAAAAGEEEAAETGGRLIVGELEEEDNFRNNNNINNNVNNNNNNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEPPLVQGADTPASQQPPFVPGNFPGHQNEGQILETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3518326 3523528 - CaPI482276_05g003830.1 Cam05g0383 125787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0383 375 CDD ACT_UUR-ACR-like 301 365 - -
Cam05g0383 375 MobiDBLite consensus disorder prediction 11 27 - -
Cam05g0383 375 Pfam Helix-loop-helix DNA-binding domain 178 229 IPR011598 GO:0046983(InterPro)
Cam05g0383 375 FunFam Basic helix-loop-helix transcription factor 168 243 - -
Cam05g0383 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 247 IPR036638 GO:0046983(InterPro)
Cam05g0383 375 Gene3D - 168 242 IPR036638 GO:0046983(InterPro)
Cam05g0383 375 ProSiteProfiles ACT domain profile. 301 375 IPR002912 -
Cam05g0383 375 CDD bHLH_AtFAMA_like 180 248 - -
Cam05g0383 375 MobiDBLite consensus disorder prediction 141 162 - -
Cam05g0383 375 PANTHER TRANSCRIPTION FACTOR FAMA 103 367 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cam05g0383 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 228 IPR011598 GO:0046983(InterPro)
Cam05g0383 375 MobiDBLite consensus disorder prediction 166 180 - -
Cam05g0383 375 MobiDBLite consensus disorder prediction 1 27 - -
Cam05g0383 375 SMART finulus 183 234 IPR011598 GO:0046983(InterPro)
Cam05g0383 375 MobiDBLite consensus disorder prediction 139 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0004 Cam-Chr5:533576 Cam05g0383 Cam-Chr5:3518326 1.50E-42 dispersed
Cam05g0383 Cam-Chr5:3518326 Cam05g0633 Cam-Chr5:5498721 1.60E-39 dispersed
Cam05g0383 Cam-Chr5:3518326 Cam09g1183 Cam-Chr9:12860593 3.00E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51855 PF00010 HLH 7.70E-10 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0383 K26213 - csv:101214530 590.112