Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0384 ATGGGTAGCGGAGAAAAGGTTTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAGGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAAGATGCAACCGACGACTTCGAAGACGTGGGCCACAGTGACAATGCAAGAGAGATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTCGCCTACACACCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCATACGCTTCTACACCAAACAAGCTTGA 405 46.42 MGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3533029 3535401 + CaPI482276_05g003840.1 Cam05g0384 125788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0384 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cam05g0384 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cam05g0384 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cam05g0384 134 FunFam Cytochrome b5 type B 3 85 - -
Cam05g0384 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Cam05g0384 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Cam05g0384 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cam05g0384 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cam05g0384 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cam05g0384 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cam05g0384 134 PANTHER CYTOCHROME B5 5 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cam05g0384 134 Gene3D - 2 86 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0384 K23490 - - csv:101214209 275.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0022 Cam-Chr1:631760 Cam05g0384 Cam-Chr5:3533029 1.00E-52 dispersed
Cam05g0067 Cam-Chr5:1113293 Cam05g0384 Cam-Chr5:3533029 1.10E-36 dispersed
Cam05g0384 Cam-Chr5:3533029 Cam06g0285 Cam-Chr6:4802720 3.30E-32 dispersed
Cam08g1498 Cam-Chr8:21197386 Cam05g0384 Cam-Chr5:3533029 1.20E-26 transposed
Cam06g0340 Cam-Chr6:5492104 Cam05g0384 Cam-Chr5:3533029 2.00E-09 transposed
Cam05g0384 Cam-Chr5:3533029 Cam06g0799 Cam-Chr6:10986942 4.60E-58 wgd
Cam05g0384 Cam-Chr5:3533029 Cam07g0188 Cam-Chr7:3080137 4.60E-50 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0022 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.2e-59 224.6
Cam05g0384 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Cam06g0799 . 1 133 NADPH P450 reductases AT5G53560 64.7 7.4e-48 186.8
Cam07g0188 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cam05g0384 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Cam06g0799 . 1 133 NADPH P450 reductases AT5G48810 60.7 1.5e-46 182.6
Cam07g0188 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cam01g0022 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.2e-45 177.2
Cam05g0384 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Cam06g0799 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.3e-47 183.7
Cam07g0188 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Cam01g0022 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.0e-40 162.2
Cam08g1498 . 1 130 NADPH P450 reductases AT1G26340 55.6 1.2e-37 152.9
Cam04g0503 . 2 281 NADPH P450 reductases AT5G17770 81.8 3.9e-131 464.5
Cam10g1638 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cam02g2493 . 287 559 NADPH P450 reductases AT5G17770 73.3 7.1e-117 417.2
Cam02g2496 . 56 191 NADPH P450 reductases AT5G17770 75.7 1.1e-53 207.2
Cam02g2500 . 303 437 NADPH P450 reductases AT5G17770 75.6 4.2e-53 205.3
Cam01g0022 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.2e-59 224.6
Cam05g0384 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Cam06g0799 . 1 133 NADPH P450 reductases AT5G53560 64.7 7.4e-48 186.8
Cam07g0188 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cam05g0384 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Cam06g0799 . 1 133 NADPH P450 reductases AT5G48810 60.7 1.5e-46 182.6
Cam07g0188 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cam01g0022 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.2e-45 177.2
Cam05g0384 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Cam06g0799 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.3e-47 183.7
Cam07g0188 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Cam01g0022 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.0e-40 162.2
Cam08g1498 . 1 130 NADPH P450 reductases AT1G26340 55.6 1.2e-37 152.9
Cam04g0503 . 2 281 NADPH P450 reductases AT5G17770 81.8 3.9e-131 464.5
Cam10g1638 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cam02g2493 . 287 559 NADPH P450 reductases AT5G17770 73.3 7.1e-117 417.2
Cam02g2496 . 56 191 NADPH P450 reductases AT5G17770 75.7 1.1e-53 207.2
Cam02g2500 . 303 437 NADPH P450 reductases AT5G17770 75.6 4.2e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156