Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g0405 | ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAACTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGATGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCCATTTCCATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG | 1350 | 47.41 | MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENGATEKLQSSSNSSMAVRLEEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3733631 | 3738301 | + | CaPI482276_05g004050.1 | Cam05g0405 | 125809 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g0405 | 449 | SUPERFAMILY | Pectin lyase-like | 77 | 444 | IPR011050 | - | |
Cam05g0405 | 449 | PRINTS | Pollen allergen Amb family signature | 349 | 368 | IPR018082 | - | |
Cam05g0405 | 449 | PRINTS | Pollen allergen Amb family signature | 147 | 172 | IPR018082 | - | |
Cam05g0405 | 449 | PRINTS | Pollen allergen Amb family signature | 247 | 268 | IPR018082 | - | |
Cam05g0405 | 449 | PRINTS | Pollen allergen Amb family signature | 123 | 140 | IPR018082 | - | |
Cam05g0405 | 449 | PRINTS | Pollen allergen Amb family signature | 420 | 443 | IPR018082 | - | |
Cam05g0405 | 449 | PRINTS | Pollen allergen Amb family signature | 183 | 199 | IPR018082 | - | |
Cam05g0405 | 449 | PRINTS | Pollen allergen Amb family signature | 327 | 346 | IPR018082 | - | |
Cam05g0405 | 449 | PRINTS | Pollen allergen Amb family signature | 391 | 415 | IPR018082 | - | |
Cam05g0405 | 449 | SMART | amb_all | 175 | 372 | IPR002022 | - | |
Cam05g0405 | 449 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 446 | IPR045032 | GO:0030570(InterPro) | |
Cam05g0405 | 449 | FunFam | Pectate lyase | 100 | 442 | - | - | |
Cam05g0405 | 449 | Gene3D | - | 100 | 442 | IPR012334 | - | |
Cam05g0405 | 449 | Pfam | Pectate lyase | 186 | 364 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g1289 | Cam-Chr4:26709969 | Cam05g0405 | Cam-Chr5:3733631 | 6.10E-79 | dispersed | |
Cam05g0405 | Cam-Chr5:3733631 | Cam05g2332 | Cam-Chr5:31373001 | 2.60E-153 | dispersed | |
Cam03g0333 | Cam-Chr3:4514431 | Cam05g0405 | Cam-Chr5:3733631 | 4.00E-177 | transposed | |
Cam08g2221 | Cam-Chr8:27475673 | Cam05g0405 | Cam-Chr5:3733631 | 5.60E-173 | transposed | |
Cam09g1998 | Cam-Chr9:34622976 | Cam05g0405 | Cam-Chr5:3733631 | 4.00E-169 | transposed | |
Cam05g0405 | Cam-Chr5:3733631 | Cam06g0790 | Cam-Chr6:10686862 | 4.40E-214 | wgd | |
Cam05g0405 | Cam-Chr5:3733631 | Cam07g0165 | Cam-Chr7:2858740 | 1.40E-204 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g0405 | K01728 | - | csv:101218188 | 852.047 |