Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0405 ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAACTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGATGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCCATTTCCATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG 1350 47.41 MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENGATEKLQSSSNSSMAVRLEEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3733631 3738301 + CaPI482276_05g004050.1 Cam05g0405 125809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0405 449 SUPERFAMILY Pectin lyase-like 77 444 IPR011050 -
Cam05g0405 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cam05g0405 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cam05g0405 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cam05g0405 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cam05g0405 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cam05g0405 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cam05g0405 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cam05g0405 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cam05g0405 449 SMART amb_all 175 372 IPR002022 -
Cam05g0405 449 PANTHER PECTATE LYASE 18-RELATED 22 446 IPR045032 GO:0030570(InterPro)
Cam05g0405 449 FunFam Pectate lyase 100 442 - -
Cam05g0405 449 Gene3D - 100 442 IPR012334 -
Cam05g0405 449 Pfam Pectate lyase 186 364 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1289 Cam-Chr4:26709969 Cam05g0405 Cam-Chr5:3733631 6.10E-79 dispersed
Cam05g0405 Cam-Chr5:3733631 Cam05g2332 Cam-Chr5:31373001 2.60E-153 dispersed
Cam03g0333 Cam-Chr3:4514431 Cam05g0405 Cam-Chr5:3733631 4.00E-177 transposed
Cam08g2221 Cam-Chr8:27475673 Cam05g0405 Cam-Chr5:3733631 5.60E-173 transposed
Cam09g1998 Cam-Chr9:34622976 Cam05g0405 Cam-Chr5:3733631 4.00E-169 transposed
Cam05g0405 Cam-Chr5:3733631 Cam06g0790 Cam-Chr6:10686862 4.40E-214 wgd
Cam05g0405 Cam-Chr5:3733631 Cam07g0165 Cam-Chr7:2858740 1.40E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0405 K01728 - csv:101218188 852.047