Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0418 ATGGAAGAAGTGAAACTCCATGGGATGTGGGCAAGTCCTTTTACTTACAGAGTGAAATGGGGTTTGGAGCTTAAGGGCATACCATACCAATACGTAGAAGAAGATATCACCAACAAATCTCCATTGCTGCTTCACTACAATCCTCTTCACAAGAAGGTTCCTGTGCTCGTTCATGGCGGAAAACCAGTGTGCGAGTCCATCGTCATCCTCGAATACATGGATGAAATATGGCCTCAATATCCTCTCTTTCCAATCAATCCCTTCGATAGAGCAATGGCTCGCTTTTGGATTAAATATACAGACAACAAGTTATTTGGAAATCGGCTTCTGTTCGGTTCCGGCAGCGGCGAAGAAGCGGAAAAAGCTAGGGCGGAGGGAATTGAATTCCTGAGAACAATCGAAGAACAATGCCTTGGCGACAAGAAATTCTTCGCCGGAGAGGCGATCGGCGCCCTGGATTTGGCGTTCGGAGGAATCGCTCAGTGGCTACCAGTTCTTGAAGAAGTTTCAGGGTGGAAGCTTCTGGACGCCGATGAATTCCCTCGCTTGTACGCTTGGACCAAAAACTTCAAGGAAGCTGCTGTGATCAGAGATAACCTACCGGACGCCGACAAGTTGGCCGGACTTTACAACCGCCTGCGCGACCAGCGGCTGCGATCTGCGGCAGAGTAA 672 49.11 MEEVKLHGMWASPFTYRVKWGLELKGIPYQYVEEDITNKSPLLLHYNPLHKKVPVLVHGGKPVCESIVILEYMDEIWPQYPLFPINPFDRAMARFWIKYTDNKLFGNRLLFGSGSGEEAEKARAEGIEFLRTIEEQCLGDKKFFAGEAIGALDLAFGGIAQWLPVLEEVSGWKLLDADEFPRLYAWTKNFKEAAVIRDNLPDADKLAGLYNRLRDQRLRSAAE 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3831855 3833645 + CaPI482276_05g004180.1 Cam05g0418 125822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0418 223 CDD GST_C_Tau 87 206 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cam05g0418 223 Gene3D - 86 221 - -
Cam05g0418 223 SFLD Glutathione Transferase (cytosolic) 1 219 IPR040079 -
Cam05g0418 223 CDD GST_N_Tau 4 77 - -
Cam05g0418 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 223 IPR010987 -
Cam05g0418 223 SUPERFAMILY Thioredoxin-like 4 104 IPR036249 -
Cam05g0418 223 SFLD Main.3: Omega- and Tau-like 1 219 IPR045073 -
Cam05g0418 223 Pfam Glutathione S-transferase, C-terminal domain 117 190 IPR004046 -
Cam05g0418 223 FunFam Tau class glutathione S-transferase 83 220 - -
Cam05g0418 223 FunFam Tau class glutathione S-transferase 1 85 - -
Cam05g0418 223 SUPERFAMILY GST C-terminal domain-like 75 215 IPR036282 -
Cam05g0418 223 Gene3D Glutaredoxin 1 85 - -
Cam05g0418 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cam05g0418 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 3 209 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cam05g0418 223 Pfam Glutathione S-transferase, N-terminal domain 3 75 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0418 K00799 - - csv:101220801 404.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1265 Cam-Chr4:26589071 Cam05g0418 Cam-Chr5:3831855 1.20E-45 dispersed
Cam05g0418 Cam-Chr5:3831855 Cam05g0421 Cam-Chr5:3845003 3.00E-78 dispersed
Cam05g0418 Cam-Chr5:3831855 Cam05g0420 Cam-Chr5:3840885 5.70E-77 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120