Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0439 ATGGAACCACCTCTAGGTTTACTGGGTAGCAGCGGCATTGCCAGCGCCGGCGGCTCTTCTGGAGCCTCCAACGATGAGAATTCTGTTTCCAAGGCTAAGGAGTTAAACAACAACCAGACGGATTTGTCATCCGAGGAATTTTCTTCCCCTGTTGAGGCTGAGCTCGAATTAGGGCTAGGGCTCAGTCTTGGAAATGGGGTTTCTTCTGGAAAGGGTAAACATGGTGGCTGGGGTGAGCGCGGCCGGATATTGACGGCGAAAGATTTTCCCTCGGCGATCTCTCCTGGTGGGTCGTCTTCTTCTTCTTCTTCGGCTAGATTCTCTGGCAGACCTGCTGCTGTTTCTGGTGTCAAGAGGGCGGCGGAACCTGTTAACCGCGACGGCGGTTCTCCTCCTCCGGCTGTCAGTCAGGTGGTGGGATGGCCGCCCTTGAGAGCTTACAGAATTAACAGCCTGGTTAACCAAGCTAAAAATCAAAGGGCTGGAGATGAAAAGGAGCTGCTTTCTCTCAAGAATAGTTCCAATGGTGTTTCAGAGAAGATCCATGATGGCAAAAATACGAGTGCCAGTGATACTGAAAAGGGGCCTTTAGGTTTTGTGAAAGTGTATATGGACGGAGTTCTAATTGGCAGGAAAGTGGATTTGAATGCCCATTCTAGCTATGAGACTTTGGCTCTGATGCTCGAGGATATGTTTTTTAAGTCTGCGGGAAGCGTCCCATCCACCGGCTTAAGTGGAGGTCAGGATGAACAAGCACCAAAACTCTCGAAACTTCTGACTGGCTCCTCTGAGTTTGTGCTCACCTATGAAGATAAAGAGGGAGACTGGTTGTTGGTTGGGGATGTTCCTTGGAGGATGTTCCTTGTCTCGGTTAAGAAACTTCGAATTATGAGGACATCTGAGGCAAAGGGACTCGGGTTTTCAGTTCCGGCAACGAGGAGTTACAACTTCCTCATTAACCAAAGCGCTATAAAACTTCCAAATAACAACAAGATTGAAGCTCACAAAGCATTATTTTCGATTTCATCCACCGCCATGTACTGGGTGGCAACACGAAACGTCGTTTTTTCCCCCCGGTGGCGTTTTTTGGCTCTTTTGATTGGCTTCCCTCCGCGCAACTTCACCTCATTTACTCACTCACCGGCGTTTTTTGAAAGGCAACGGCTTGAAAAGTTGCACTTTGGGAAAGGTAGAAAATATTCAAGAGGAAGCATCAAAGCTGCTAAGAAGTTTAAGGATACTAATAATGTCCAAGACGATAAGTTCCTTCCTCACATTTTATGGTGGAAAGAGATGGTGGAATCATGCAAGAAGCCGTCATCTGTCCAGCTGGTTAAGAGGCTTGACTTTTCCAATTTGCTGGGTTTAGATATTAACCTGAAAAATGGGAGTCTTAAAGAAGGAACCCTTAACTGGGAGATTTTACAGTTCAAAGCAAAGTTTCCTCGAGAAGTTTTGCTCTGTAGAGTCGGAGATTTTTATGAAGCAATTGGAATAGATGCTTGCATACTTGTAGAATACGCTGGTTTAAATCCTTTTGGAGGTCAGCGCATGGATAGTATTCCAAAAGCTGGTTGCCCTGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACATGTAATGGGTTCTCAGTGTGCATAGTGGAAGAAGTTCAGGGCCCAATGCAAGCTCGTTCTCGCAAAGGACGTTTTATATCTGGGCATGCACACCCAGGCAGTCCTTATGTCTTTGGGCTCGTTGGGGTCGATCACGATCTTGACTTTCCAGAACCAATGCCTGTGGTTGGAATATCTCGATCTGCAAGGGGCTATTGCATAAGCCTTGTCATAGAGACCATGAAGACATATTCGTCAGAGGATGGTTTGACAGAAGAAGCGCTGGTTACTAAACTGCGCACTTGTCAATACCATCATTTATTTCTTCACACTTCATTAAGGAACAACTCCTCAGGCACTTGTCGCTGGGGTGAATTTGGTGAGGGTGGACGGCTATGGGGGGAATGTAATTCCAGACATTTTGAGTGGTTCGATGGAAATCCTCTTGATAATTTTTTGTATAAGGTTAAAGAGCTTTATGGTCTTGATGATAAAGTTACATTTAGGAATGTAACAATATCGTCAGAGAATAGGCCACATCCATTAACACTAGGAACTGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCTTGTTTGTTGAAGGTGTTGCTTCCATCAAATTGTGCTGGCCTTCCTGCATTGTATATTAGGGATCTTCTTCTCAATCCTCCTGCTTATGAGACTGCGACCACTATTCAAGCAACATGCAGGCTTATGAGCAATGTCACATGTGCAATTCCAGACTTCACTTGCTTTCCGCCAGCCAAGCTTGTGAAATTATTGGAAATGAGGGAGGCCAATCATATTGAATTCTGTAGGATGAAGAATGTACTTGACGAAATATTACACATGCATAAAAATTGTGAGTTAAACAATATCCTGAAATTGTTGATGGATCCTGCATCCGTGGCAACTGGGTTGAAAATTGACTGTGATACATTCGTCAACGAATGTGAATGGGCTTCCAGTAGAGTTGACGAAATGATTTTTCTTGGTAGTGAAAGTGAAAGTGATCAGAAAATCAGTTCTTATCCTATCATTCCTAACGATTTTTTCGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAGAGGATTCACATTGAAGAATCGTGTACAGAAGTTGAAAGGGCAGCTGAAGCACTCTCCCTTGCAGTTACTGAAGATTTCGTCCCAATAATTTCAAGAATCAAGGCTACTACAGCACCACTAGGAGGTCCAAAGGGAGAAATATTGTATGCTCGAGAGCATCAATCTGTCTGGTTCAAAGGAAGACGGTTTGCACCAGCTGTATGGGCTGGAAGCCCTGGAGAAGATGAAATTAAACAATTGAAACCTGCTCTTGATTCAAAGGGGAAAAAGGTTGGGGAGGAGTGGTTTACCACGAAGAAGGTGGAGGATGCTTTAGCAAGGTACCAAGAGGCCAATGCCAAAGCTAAAGCAAAAGTAGTGGATCTGCTGAGGCAACTTTCTTCTGAATTGCTAGCTAAAATTAACGTCCTAGTCTTTGCTTCCATGTTACTCATAATCGCCAGGGCGTTATTTGCTCATGTGAGTGAAGGGAGGAGGAGGAAATGGGTTTTTCCCACCCTTGTTGCACCCAGCGATAGGTCGAAGGGCATACAATCATTGGAGGGGAAAGTTGGGATGAAGCTGATTGGACTATCTCCCTATTGGTTTGATGCCGTGGAAGGCAATGCTGTGCAGAATAGTATTGAGATGGAATCGTTATTTCTTTTGACTGGTCCAAATGGGGGTGGAAAATCTAGTTTGCTTCGATCCATTTGTGCTGCTGCTTTGCTTGGGATATGTGGATTTATGGTACCAGCAGAGTCCGCCCTGATTCCCCACTTTGACTCAATTATGCTTCATATGAAATCTTTTGATAGTCCTGCTGATGGAAAAAGTTCGTTTCAGGTGGAAATGTCGGAGATGAGATCCATCATCAGTCGAGTAACAGAAAGAAGTCTTGTACTTATAGATGAAATCTGTCGCGGAACAGAGACAGCAAAAGGAACTTGTATTGCTGGGAGCATTGTTGAAGCTCTTGATAAAGTAGGTTGTCTTGGTATTGTCTCCACTCACTTGCATGGAATATTCAATTTGCCTTTAGATACCAAAAACACTGTGTACAAAGCAATGGGAACCATTTGTGCTGATGGACGAACGGTTCCCACTTGGAAGTTGATTAGTGGAATATGTAGAGAGAGCCTTGCCTTTGAAACAGCGAAGAATGAAGGAATCTCTGAAGCTATAATTCAAAGGGCTGAAGATTTGTATCTCTCAAATTATGCTAAAGAAGGAATTTCAGGAAAAGAGAAGACAGATTTGAACTTTTCTGTTTCTTCTCATGCAAGCCTTAATGGCAATGGCAAATCCCATCACAAGTCAAATGGTGTTATAGTAGAAGCTGATAAGCCAAAAACAGAGACAGCTAGCAAAACAGGTGTCTTGTGGAAGAAAATTGAGGGGGCTATCACTGCAATATGCCAAAAGAAGTTGATAGAGTTCCACAAAGATAACAACACATTGGAACCTGCAGAAATTCAATGTGTTCTAATTGATGCCAAAAAGAAGCCACCTCCATCAACAATAGGTGCTTCGAGCGTGTACGTGATTCTTAGACCGGATAGTAAATTCTACGTCGGACAGACTGATGATCTGGAGGGTCGAGTCCGTTCACATCGTTTGAAGGAAGGAATGCGGGATGCTGCATTTCTTTATTTTTTGGTCCCTGGTAAGAGCTTAGCTTGCCAACTCGAAACTCTTCTCATCAATCGACTTCCTGATCACGGGTTCCAGCTAACTAATGTTGCTGATGGAAAGCACCGGAATTTCGGCACGTACAATCTCTTACCAGATAATGTGACTGTTTGTTCATAA 4485 43.95 MEPPLGLLGSSGIASAGGSSGASNDENSVSKAKELNNNQTDLSSEEFSSPVEAELELGLGLSLGNGVSSGKGKHGGWGERGRILTAKDFPSAISPGGSSSSSSSARFSGRPAAVSGVKRAAEPVNRDGGSPPPAVSQVVGWPPLRAYRINSLVNQAKNQRAGDEKELLSLKNSSNGVSEKIHDGKNTSASDTEKGPLGFVKVYMDGVLIGRKVDLNAHSSYETLALMLEDMFFKSAGSVPSTGLSGGQDEQAPKLSKLLTGSSEFVLTYEDKEGDWLLVGDVPWRMFLVSVKKLRIMRTSEAKGLGFSVPATRSYNFLINQSAIKLPNNNKIEAHKALFSISSTAMYWVATRNVVFSPRWRFLALLIGFPPRNFTSFTHSPAFFERQRLEKLHFGKGRKYSRGSIKAAKKFKDTNNVQDDKFLPHILWWKEMVESCKKPSSVQLVKRLDFSNLLGLDINLKNGSLKEGTLNWEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSIPKAGCPVVNLRQTLDDLTCNGFSVCIVEEVQGPMQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCISLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSGTCRWGEFGEGGRLWGECNSRHFEWFDGNPLDNFLYKVKELYGLDDKVTFRNVTISSENRPHPLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALYIRDLLLNPPAYETATTIQATCRLMSNVTCAIPDFTCFPPAKLVKLLEMREANHIEFCRMKNVLDEILHMHKNCELNNILKLLMDPASVATGLKIDCDTFVNECEWASSRVDEMIFLGSESESDQKISSYPIIPNDFFEDMESSWKGRVKRIHIEESCTEVERAAEALSLAVTEDFVPIISRIKATTAPLGGPKGEILYAREHQSVWFKGRRFAPAVWAGSPGEDEIKQLKPALDSKGKKVGEEWFTTKKVEDALARYQEANAKAKAKVVDLLRQLSSELLAKINVLVFASMLLIIARALFAHVSEGRRRKWVFPTLVAPSDRSKGIQSLEGKVGMKLIGLSPYWFDAVEGNAVQNSIEMESLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIISRVTERSLVLIDEICRGTETAKGTCIAGSIVEALDKVGCLGIVSTHLHGIFNLPLDTKNTVYKAMGTICADGRTVPTWKLISGICRESLAFETAKNEGISEAIIQRAEDLYLSNYAKEGISGKEKTDLNFSVSSHASLNGNGKSHHKSNGVIVEADKPKTETASKTGVLWKKIEGAITAICQKKLIEFHKDNNTLEPAEIQCVLIDAKKKPPPSTIGASSVYVILRPDSKFYVGQTDDLEGRVRSHRLKEGMRDAAFLYFLVPGKSLACQLETLLINRLPDHGFQLTNVADGKHRNFGTYNLLPDNVTVCS 1494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3976073 3996877 - CaPI482276_05g004390.1 Cam05g0439 125843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0439 1494 SUPERFAMILY DNA repair protein MutS, domain I 463 573 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cam05g0439 1494 MobiDBLite consensus disorder prediction 92 109 - -
Cam05g0439 1494 Gene3D - 1088 1367 IPR027417 -
Cam05g0439 1494 SMART mutATP5 1109 1295 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cam05g0439 1494 ProSitePatterns DNA mismatch repair proteins mutS family signature. 1190 1206 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cam05g0439 1494 Pfam AUX/IAA family 119 306 IPR033389 -
Cam05g0439 1494 FunFam DNA mismatch repair protein 1083 1363 - -
Cam05g0439 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1100 1293 IPR027417 -
Cam05g0439 1494 PANTHER MUTL PROTEIN ISOFORM 1 346 1491 IPR053276 -
Cam05g0439 1494 Coils Coil 996 1023 - -
Cam05g0439 1494 CDD ABC_MutS_homologs 1099 1282 - -
Cam05g0439 1494 Pfam MutS domain I 476 565 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cam05g0439 1494 Coils Coil 153 173 - -
Cam05g0439 1494 Gene3D DNA repair protein MutS, domain I 461 569 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cam05g0439 1494 MobiDBLite consensus disorder prediction 88 136 - -
Cam05g0439 1494 MobiDBLite consensus disorder prediction 13 47 - -
Cam05g0439 1494 MobiDBLite consensus disorder prediction 1 50 - -
Cam05g0439 1494 Pfam MutS domain V 1113 1293 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cam05g0439 1494 Gene3D - 193 312 - -
Cam05g0439 1494 SUPERFAMILY CAD & PB1 domains 195 297 - -
Cam05g0439 1494 ProSiteProfiles PB1 domain profile. 197 301 IPR053793 -
Cam05g0439 1494 SUPERFAMILY GIY-YIG endonuclease 1402 1465 IPR035901 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0439 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0439 Cam-Chr5:3976073 Cam07g0135 Cam-Chr7:2524151 2.70E-42 dispersed
Cam01g0429 Cam-Chr1:4700757 Cam05g0439 Cam-Chr5:3976073 3.30E-15 transposed
Cam05g0960 Cam-Chr5:8653389 Cam05g0439 Cam-Chr5:3976073 5.40E-19 transposed
Cam06g1640 Cam-Chr6:27834212 Cam05g0439 Cam-Chr5:3976073 8.80E-15 transposed
Cam09g0514 Cam-Chr9:5232225 Cam05g0439 Cam-Chr5:3976073 1.10E-24 transposed
Cam11g0302 Cam-Chr11:4543648 Cam05g0439 Cam-Chr5:3976073 5.50E-24 transposed
Cam05g0439 Cam-Chr5:3976073 Cam06g0752 Cam-Chr6:10128419 3.90E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g788 Blo01g00304 . . Bda08g00002 . Bpe14g01286 . Bma05g01256 . Cmo17g00135 . Cma14g01847 . Car14g01655 . . Cpe03g01547 . . . . . . . Cla06g00701 Cam06g0752 Cec06g0758 Cco06g0770 Clacu06g0743 Cmu06g0726 Cre06g1503 Cone14ag0184 Cone15ag0193 . . Lsi05g01777 Csa02g01024 Chy05g00286 Cme06g00445 . . . Bda13g00034 . . Bma02g00747 . . . Cmo14g01891 . Cma17g00132 . Car17g00118 Cpe12g00116 . . . . . . . . Cla05g00403 Cam05g0439 Cec05g0447 Cco05g0447 Clacu05g0436 Cmu05g0415 Cre05g0477 Lsi09g01192 Csa03g01162 Chy06g00425 Cme05g00622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51860 PF02309 AUX_IAA 4.20E-56 CL0072 Cam TR