Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0451 ATGGCCTGGGTCGAATTCCAAGATCGTACAATAAATCCGGCCCATCGAACCAAGCTTTTGAAAACCCCTAGTATCAGTTTACGGACTCTCTTCTTCCCCGATCTCTCCTTCCATCTCCGCTTCGTCTCGTGCTGCCGGTTGCTGACTGCCCCAACGTTGCCGTCCGCTGTCGGGGAAAATCTCTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAATTCTGGATTACTCTTCGAGAAGCGCTTAATCGAGAGGCACATTTTGGACTATGGGAAATGCCCTGTTACAGGTGAACCGCTTTCCATTGATGACATTGTTCCAATTAAAACCGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCATTAGAACAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAAAAGGAACGGGATGAGGCTAGGTCCTTACTTGCTCAGGCAGAGAGGCAGATGCCTTTGTCGTCAACTTCATTTTCATCCAATGCTGCTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTGCTCTATCACAACAAAGGAAGAGGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTCTAGAAAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAGCAAACCAGGCATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCGACGGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTGGGCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTTTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCATACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCTCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCGGGATTATGCCTGACCCAGGTTGCAGAGGATTCACAAACGGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCAGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAAATTTGATGGACACGTTGGGGCAGTAACTGCAATATCTTTTTCTGAAAATGGTTATTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCTGTGGACTTTGATCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGACATAAGGGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGCATCAAAACTATTCCAGATTTGTCTGGCACAGGGAAGGCAACTTGTCTAAAATTTGGACCGGATGCAAAATACTTGGCAGTCGGGTCAATGGATCGAAATCTTCGAATCTTTGGTGTGCCTGGGGAAGATGGATTGATTTATGGTATTAAGCAACAAGATTCTGAAGCAGAGGCGTCTTTGGAAGGTGTCTGCCCGACTTCATGTAGCCATAGAACTGTTAATATACGCTGA 1821 44.98 MAWVEFQDRTINPAHRTKLLKTPSISLRTLFFPDLSFHLRFVSCCRLLTAPTLPSAVGENLSGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSFSSNAAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNAALSQQRKRRQIPPTLVPVEALESYTQISSHPLHKTSKPGIISLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVAEDSQTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVDFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGEDGLIYGIKQQDSEAEASLEGVCPTSCSHRTVNIR 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4040587 4049286 - CaPI482276_05g004510.1 Cam05g0451 125855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0451 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 348 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 FunFam pre-mRNA-processing factor 19 253 569 - -
Cam05g0451 606 SUPERFAMILY RING/U-box 61 109 - -
Cam05g0451 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 487 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 Pfam WD domain, G-beta repeat 356 392 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 Pfam WD domain, G-beta repeat 311 347 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 Pfam WD domain, G-beta repeat 442 478 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 Pfam WD domain, G-beta repeat 530 567 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 Pfam WD domain, G-beta repeat 413 437 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 CDD WD40 280 567 - -
Cam05g0451 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 116 IPR013083 -
Cam05g0451 606 SUPERFAMILY WD40 repeat-like 278 567 IPR036322 GO:0005515(InterPro)
Cam05g0451 606 Coils Coil 169 189 - -
Cam05g0451 606 SMART Ubox_2 60 122 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g0451 606 FunFam Pre-mRNA-processing factor 19, putative 60 114 - -
Cam05g0451 606 PANTHER PRE-MRNA-PROCESSING FACTOR 19 61 568 IPR038959 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER)
Cam05g0451 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Cam05g0451 606 SMART WD40_4 440 478 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 SMART WD40_4 309 348 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 SMART WD40_4 481 520 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 SMART WD40_4 527 568 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 SMART WD40_4 396 437 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 SMART WD40_4 354 393 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 SMART WD40_4 264 306 IPR001680 GO:0005515(InterPro)
Cam05g0451 606 CDD RING-Ubox_PRP19 61 110 - -
Cam05g0451 606 Gene3D - 256 569 IPR015943 GO:0005515(InterPro)
Cam05g0451 606 ProSiteProfiles U-box domain profile. 52 126 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g0451 606 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 447 480 - -
Cam05g0451 606 Pfam Prp19/Pso4-like 120 185 IPR013915 -
Cam05g0451 606 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0451 Cam-Chr5:4040587 Cam10g1512 Cam-Chr10:28874888 6.60E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0451 K10599 - csv:101204424 1008.05