Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0462 ATGGAAGAGAGTAGCAGAGCCACCGCAATCCGCCAGCTGCAGGACGCGAAGCGATCATCGGGAAAATCTTACAACCAGATAGCGGAAGAGACTGGCCTCACTAACGTCTATGTCGCTCAGCTTCTCCGCCGTCAAGCACACCTTAAGCCTGAGACTGTCCCTAAGTTGAGGTCCTCCTTGCCTCAACTCACCGATGATCATATTCAAGAGATGATGCGCCCGCCAATGAGGTCCTACGATCCTCGTTTGATCCAAGAACCCTCAATTTACAGATTGAACGAAGCAGTTATGCATTTTGGCGAGAGTATCAAGGAAATTATCAATGAGGAGTTTGGCGATGGAATTATGTCAGCCATAGACTTCTACTGCTCAGTTGACAAGGTCAAGGGTGTCGATGGGAAGGATCGTGTTGTGATAACTTTTGATGGTAAATATTTGCCCTACACTGAGCAGAAGGTAGAGCACATGGCTTCAAGACGACCATCGCTGGAAAGTTGA 498 48.19 MEESSRATAIRQLQDAKRSSGKSYNQIAEETGLTNVYVAQLLRRQAHLKPETVPKLRSSLPQLTDDHIQEMMRPPMRSYDPRLIQEPSIYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSVDKVKGVDGKDRVVITFDGKYLPYTEQKVEHMASRRPSLES 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4121971 4124123 + CaPI482276_05g004620.1 Cam05g0462 125866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0462 165 Gene3D - 1 82 IPR010982 GO:0003677(InterPro)
Cam05g0462 165 SUPERFAMILY Cyanase C-terminal domain 85 150 IPR036581 GO:0009439(InterPro)
Cam05g0462 165 CDD Cyanase_C 85 151 IPR003712 GO:0009439(InterPro)
Cam05g0462 165 PRINTS Cyanase signature 136 146 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cam05g0462 165 PRINTS Cyanase signature 37 54 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cam05g0462 165 PRINTS Cyanase signature 17 32 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cam05g0462 165 PRINTS Cyanase signature 104 120 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cam05g0462 165 PRINTS Cyanase signature 86 100 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cam05g0462 165 Gene3D - 85 151 IPR036581 GO:0009439(InterPro)
Cam05g0462 165 MobiDBLite consensus disorder prediction 7 24 - -
Cam05g0462 165 FunFam Cyanate hydratase 85 151 - -
Cam05g0462 165 MobiDBLite consensus disorder prediction 1 24 - -
Cam05g0462 165 NCBIfam cyanase 11 149 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cam05g0462 165 SMART Cyanate_lyase_2 78 151 IPR003712 GO:0009439(InterPro)
Cam05g0462 165 Hamap Cyanate hydratase [cynS]. 1 165 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cam05g0462 165 PANTHER CYANATE HYDRATASE 1 160 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cam05g0462 165 Pfam Cyanate lyase C-terminal domain 83 149 IPR003712 GO:0009439(InterPro)
Cam05g0462 165 PIRSF Cyanate_hydratas 1 151 IPR008076 GO:0008824(InterPro)|GO:0009439(InterPro)
Cam05g0462 165 SUPERFAMILY lambda repressor-like DNA-binding domains 10 81 IPR010982 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0462 K01725 - - csv:101205401 292.352
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g751 Blo01g00063 Blo12g00141 Bda03g01090 . Bpe04g00988 . Bma04g01015 Bma05g01248 . . Cma06g01306 Cma14g01830 Car06g01120 . . Cpe08g00349 Cpe03g01533 . . . . . . . . . . . . . . . . . . Lsi05g01752 . . Cme06g00469 . . . . Bpe05g01102 . . . . Cmo06g01313 Cmo14g01871 . . . . . . . . . . . . . Cla05g00425 Cam05g0462 Cec05g0470 Cco05g0471 Clacu05g0459 Cmu05g0438 Cre05g0499 . Csa03g01187 Chy06g00451 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013973 0 1 1 1 0 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 24