Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0464 ATGATAAATTGTATTCGCTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCATTCATCAGATTCTCTGGCGACTCGAGATTATTCAGCTAGTGGTTTTTCATCCCGAACTGGCGAGGTGGAACAAAAGGTGGATAATGGCAACATTGAAGAGGCCGAATCATCTCTTCGTGAGAGTGGCTATTTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTGGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATTGCTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATACGAACAAAATAGGCGCCAATCACAAAGCGATGTTGTGCCTACTATGTCGATGCATGCAATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCGGCAAAATCATGCAAACTAATTTTAGACACTGTTGAATCTTCATTCCCAGAAGGCTTACCTGAAAACTTTGCTAATGATTGTAAATTACAAGAGACATTAACGAAGGCTGTTGACTTACTTCCAGAATTGTGGATATCTGCGGGTTCTCCAGAAGAATCTATCTTGTCATATAGGCGCGCCCTTCTCTACCAATGGAATTTGGGAATGGAAACCAGAGCAAAGATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTAATGCAAGTCCTCCAAATCTTCGTTCACAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGATGAGAAAATTTATACTTGGATTGATTGTATGGGACCCGTCAATAATAGAGCATCTCTCGTTTGCACTGTCTATTTCAGGGGAATTTGGAGCTCTAGCTAATGAGGTTGAACAATTGCCTCCTGGAATTATAGCAAGAAAAGAAAAATACTGTATCCTAGCACTTTGTTACTATGGGGAAGGTAAAGGCTTAGTTGCATTGAATCTTTTGAAGAACTTCTTGAATAATATAGAGAACGTTGACTGCTTACTGGAATTGTTGCTGGCTTCAAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGCTGAGGGAGTGACATACACATTGAGAGTGCTGTCAGAGCTGCATGGTAAATGCCTCCAGATGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTATGTCCAAATTTGTTGCTTCAGATTCTCAGAAAACTTTGAAGCAGTCTGAAGCACTCAAGGCGCTACAAACTGCTGAGCAACTGATGAAACAAAGAGATCCATTCATTGTTTACCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATTTTGCTCTATACTATGCAAAACAGCTAGTGAAACTTGAGGCCGGCTCTAGTATGAAGTCTTACATACTCTTGGCTAGAATATTGTCTGCCCAGAAACGGTTTGTGGATGCGGAGACTGTTCTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGGGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCCCAGGGCCAGCTAAAGAACGGTATAGAAACGTACAGTCATCTTCTTGCTATAATTCAAGTTCAGACCAAAAGTAGTGGAAAGATGCTTCCAAAGGATATGAGAAAATCTGACAGAAGTCTGGAAGTAGATACATGGCATGACTTAGCCAATATTTACACAAGCTTGTCTCAATGGCGGGATGCTGAGATCTGTCTGTCAAAATTGGAGGCAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTGCTCTACGAGTCGAAGGGTCTTCCACGAGATGCTCTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCAACTGCCTGTCTTCTCCAACAGCTGGGCGGCAGTCAGTCATTTCCTGTGGTGAGAAGCTTGCTAACGGATGCCCTTCGACTAGATCGAGCAAATCCATTGGCATGGTACAGTCTTGGGCTGCTATATAAAGCTGACGCTGGGGCATCGGCACTGGAGGTTGCTGAATGCTTTGAAGCTGCAACTCTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2133 42.15 MINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVEQKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESSFPEGLPENFANDCKLQETLTKAVDLLPELWISAGSPEESILSYRRALLYQWNLGMETRAKIEKEFAIFLLYSGCNASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKFILGLIVWDPSIIEHLSFALSISGEFGALANEVEQLPPGIIARKEKYCILALCYYGEGKGLVALNLLKNFLNNIENVDCLLELLLASKLCGENLVCLAEGVTYTLRVLSELHGKCLQMASVANCLLGVLLSAMSKFVASDSQKTLKQSEALKALQTAEQLMKQRDPFIVYHLCLEYAEQRKLDFALYYAKQLVKLEAGSSMKSYILLARILSAQKRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQVQTKSSGKMLPKDMRKSDRSLEVDTWHDLANIYTSLSQWRDAEICLSKLEAINPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTACLLQQLGGSQSFPVVRSLLTDALRLDRANPLAWYSLGLLYKADAGASALEVAECFEAATLLEESAPVEPFR 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4132975 4136485 - CaPI482276_05g004640.1 Cam05g0464 125868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0464 710 Pfam Tetratricopeptide repeat 605 630 IPR019734 GO:0005515(InterPro)
Cam05g0464 710 SUPERFAMILY TPR-like 420 538 IPR011990 GO:0005515(InterPro)
Cam05g0464 710 SMART tpr_5 474 507 IPR019734 GO:0005515(InterPro)
Cam05g0464 710 SMART tpr_5 132 165 IPR019734 GO:0005515(InterPro)
Cam05g0464 710 SMART tpr_5 510 543 IPR019734 GO:0005515(InterPro)
Cam05g0464 710 SMART tpr_5 598 631 IPR019734 GO:0005515(InterPro)
Cam05g0464 710 SMART tpr_5 564 597 IPR019734 GO:0005515(InterPro)
Cam05g0464 710 PANTHER PROTEIN NPG1 2 710 IPR043376 -
Cam05g0464 710 Gene3D Tetratricopeptide repeat domain 552 705 IPR011990 GO:0005515(InterPro)
Cam05g0464 710 SUPERFAMILY TPR-like 511 680 IPR011990 GO:0005515(InterPro)
Cam05g0464 710 ProSiteProfiles TPR repeat profile. 598 631 IPR019734 GO:0005515(InterPro)
Cam05g0464 710 Gene3D Tetratricopeptide repeat domain 37 551 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0464 Cam-Chr5:4132975 Cam11g1690 Cam-Chr11:29572260 1.50E-163 dispersed
Cam05g0464 Cam-Chr5:4132975 Cam07g0121 Cam-Chr7:2409350 1.50E-243 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0464 K21843 - csv:101206105 1305.43