Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g0492 | ATGGATTACTCTGGATTCTTCTCCCCGGTTTCCGATTTCTCCTCCGAATCATCGTTCGGTTCACCAGAATCATCCTTCATGAATTTGGACCACAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTATGGCCTAATCTCCGAGGGGACACAGGATTCCTCCGACAACAGTATCGGAACGGCGCGAGTGAAGGAAGAGGAAGTCGATTCGATCGGTGAAGAAAGCCCAAAGAAGGAGAGGGCTTACAGGGGAGTTCGTCGCCGGCCATGGGGAAAATTTGCGGCGGAAATTAGAGATTCTACTAGACATGGCATAAGGGTATGGTTAGGAACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCTTACGATCAAGCCGCCTTTTCAATGAGGGGTGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTTAGGGAGTCTCTCAAAGAAATGAATTGCAGTGGCGGCGGCAGTGATAGTATAGCTGAGGACGGCGGCTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCGATTAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAGAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGAGCACTTCTCAAAGTGGTAGCCCTTGTTCTTTCTAA | 681 | 48.02 | MDYSGFFSPVSDFSSESSFGSPESSFMNLDHNFLPFNENDSEEMLLYGLISEGTQDSSDNSIGTARVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGSDSIAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLSTSQSGSPCSF | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4340406 | 4341086 | - | CaPI482276_05g004920.1 | Cam05g0492 | 125896 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g0492 | 226 | MobiDBLite | consensus disorder prediction | 63 | 84 | - | - | |
Cam05g0492 | 226 | ProSiteProfiles | AP2/ERF domain profile. | 85 | 143 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g0492 | 226 | SUPERFAMILY | DNA-binding domain | 85 | 144 | IPR016177 | GO:0003677(InterPro) | |
Cam05g0492 | 226 | Gene3D | AP2/ERF domain | 85 | 145 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g0492 | 226 | Pfam | AP2 domain | 86 | 135 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g0492 | 226 | MobiDBLite | consensus disorder prediction | 8 | 23 | - | - | |
Cam05g0492 | 226 | MobiDBLite | consensus disorder prediction | 53 | 84 | - | - | |
Cam05g0492 | 226 | PANTHER | DNA-BINDING DOMAIN | 56 | 186 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Cam05g0492 | 226 | FunFam | Ethylene-responsive transcription factor 2 | 84 | 145 | - | - | |
Cam05g0492 | 226 | CDD | AP2 | 86 | 145 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g0492 | 226 | PRINTS | Ethylene responsive element binding protein signature | 109 | 125 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g0492 | 226 | PRINTS | Ethylene responsive element binding protein signature | 86 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g0492 | 226 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cam05g0492 | 226 | SMART | rav1_2 | 85 | 149 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0492 | Cam-Chr5:4340406 | Cam06g0702 | Cam-Chr6:9450458 | 4.10E-67 | dispersed | |
Cam05g0492 | Cam-Chr5:4340406 | Cam05g0493 | Cam-Chr5:4363395 | 5.60E-16 | tandem | |
Cam05g0492 | Cam-Chr5:4340406 | Cam06g0701 | Cam-Chr6:9411834 | 1.90E-19 | wgd | |
Cam05g0492 | Cam-Chr5:4340406 | Cam06g0060 | Cam-Chr6:2471612 | 2.10E-15 | wgd | |
Cam05g0492 | Cam-Chr5:4340406 | Cam07g0098 | Cam-Chr7:2132818 | 2.10E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51862 | PF00847 | AP2 | 2.60E-14 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g0492 | K14516 | - | csv:101210326 | 352.829 |