Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0492 ATGGATTACTCTGGATTCTTCTCCCCGGTTTCCGATTTCTCCTCCGAATCATCGTTCGGTTCACCAGAATCATCCTTCATGAATTTGGACCACAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTATGGCCTAATCTCCGAGGGGACACAGGATTCCTCCGACAACAGTATCGGAACGGCGCGAGTGAAGGAAGAGGAAGTCGATTCGATCGGTGAAGAAAGCCCAAAGAAGGAGAGGGCTTACAGGGGAGTTCGTCGCCGGCCATGGGGAAAATTTGCGGCGGAAATTAGAGATTCTACTAGACATGGCATAAGGGTATGGTTAGGAACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCTTACGATCAAGCCGCCTTTTCAATGAGGGGTGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTTAGGGAGTCTCTCAAAGAAATGAATTGCAGTGGCGGCGGCAGTGATAGTATAGCTGAGGACGGCGGCTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCGATTAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAGAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGAGCACTTCTCAAAGTGGTAGCCCTTGTTCTTTCTAA 681 48.02 MDYSGFFSPVSDFSSESSFGSPESSFMNLDHNFLPFNENDSEEMLLYGLISEGTQDSSDNSIGTARVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGSDSIAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLSTSQSGSPCSF 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4340406 4341086 - CaPI482276_05g004920.1 Cam05g0492 125896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0492 226 MobiDBLite consensus disorder prediction 63 84 - -
Cam05g0492 226 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0492 226 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677(InterPro)
Cam05g0492 226 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0492 226 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0492 226 MobiDBLite consensus disorder prediction 8 23 - -
Cam05g0492 226 MobiDBLite consensus disorder prediction 53 84 - -
Cam05g0492 226 PANTHER DNA-BINDING DOMAIN 56 186 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cam05g0492 226 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Cam05g0492 226 CDD AP2 86 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0492 226 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0492 226 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0492 226 MobiDBLite consensus disorder prediction 1 23 - -
Cam05g0492 226 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0492 Cam-Chr5:4340406 Cam06g0702 Cam-Chr6:9450458 4.10E-67 dispersed
Cam05g0492 Cam-Chr5:4340406 Cam05g0493 Cam-Chr5:4363395 5.60E-16 tandem
Cam05g0492 Cam-Chr5:4340406 Cam06g0701 Cam-Chr6:9411834 1.90E-19 wgd
Cam05g0492 Cam-Chr5:4340406 Cam06g0060 Cam-Chr6:2471612 2.10E-15 wgd
Cam05g0492 Cam-Chr5:4340406 Cam07g0098 Cam-Chr7:2132818 2.10E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51862 PF00847 AP2 2.60E-14 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0492 K14516 - csv:101210326 352.829