Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0496 ATGAAGATCATGGTCGCCATTAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGCGTTGAGACCCAGAATGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCCCTGCGTATCAAGGAGGCTGGCTTCGCCTCTGAGGTTGTGGCGGTCAGCATGGGTCCGGCTCAGTGCGTCGACACTCTCAGGACGGGCCTAGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTCTCTGTTGCTAAGCTTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAACCAAACCGGGCAGATGATTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCGAAGGTTGTGATAGACAAGGAGAAGCAGGCAGTGACAGTGGACAGAGAAGTGGATGGTGGTCTTGAGACCCTCTGTTTGGACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAATCAAAATCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCAGATTTAGAGGTCGTTGAAGTTACGGAACCTCCAAAAAGAAAAGCGGTAGGCTATTGGATGGGCTGTGATTTTCGGATCACCATTCCGTTCCGACCGCGAGGTGGTGGGGCAGACAATGATCCCCAACCAGATAAACAAACACGGCGGCGGTTAATTGAGATTTCCTTCTCCCAAAAAGTTCCTTTTTTTATACACGTGTTCGATTATCAATGGTTCTTCCAATCCGCCCTCATCGTTTTTTTTCACCCATTTTTCCATTCCCTAATTTTCCATGGACTTTTCAATCTCTTCGATGGCGAAATGGGACTGAAATTGGGAGCAGAGGGGGATAGTTGTGCGGAGACTGATGTTTCAGCTGGGCGTGTTGAGTCTGAAGAAAACGAGTGTTCGCGGAAGAGGGCACGAGATGGGTCGTGCGCTGGACCAACTTCGAAAGCTTGTCGCGAGAGGTTGCGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTACGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATCATTCTGAAGGAAGACAAAAAACGAATCGAACAACAGTTGAAATCTGTAGTCGTTCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTCTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG 1533 47.29 MKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGFASEVVAVSMGPAQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKLLKALVEVEKPGLLLLGKQAIDDDCNQTGQMIAGLLNWPQGTFASKVVIDKEKQAVTVDREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKSIKKFTPQELNVDVKPDLEVVEVTEPPKRKAVGYWMGCDFRITIPFRPRGGGADNDPQPDKQTRRRLIEISFSQKVPFFIHVFDYQWFFQSALIVFFHPFFHSLIFHGLFNLFDGEMGLKLGAEGDSCAETDVSAGRVESEENECSRKRARDGSCAGPTSKACRERLRREKLNDRFLDLSIALEPSRPTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKKRIEQQLKSVVVPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWQYLPPSVRDTSQDHELRPPAA 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4389238 4396505 + CaPI482276_05g004960.1 Cam05g0496 125900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0496 510 SMART ETF_2 23 213 IPR014730 -
Cam05g0496 510 Pfam Helix-loop-helix DNA-binding domain 359 407 IPR011598 GO:0046983(InterPro)
Cam05g0496 510 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 157 177 IPR000049 GO:0009055(InterPro)
Cam05g0496 510 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 406 IPR011598 GO:0046983(InterPro)
Cam05g0496 510 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 1 230 IPR012255 GO:0005739(PANTHER)|GO:0009055(PANTHER)|GO:0009055(InterPro)|GO:0009063(PANTHER)|GO:0033539(PANTHER)
Cam05g0496 510 FunFam Electron transfer flavoprotein subunit beta 1 235 - -
Cam05g0496 510 Gene3D HUPs 1 236 IPR014729 -
Cam05g0496 510 SMART finulus 361 412 IPR011598 GO:0046983(InterPro)
Cam05g0496 510 CDD bHLH_AtILR3_like 360 435 - -
Cam05g0496 510 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 426 IPR036638 GO:0046983(InterPro)
Cam05g0496 510 Coils Coil 396 451 - -
Cam05g0496 510 Pfam Electron transfer flavoprotein domain 26 207 IPR014730 -
Cam05g0496 510 CDD ETF_beta 2 205 IPR033948 -
Cam05g0496 510 Gene3D - 358 435 IPR036638 GO:0046983(InterPro)
Cam05g0496 510 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0514 Cam-Chr3:5988877 Cam05g0496 Cam-Chr5:4389238 1.30E-20 dispersed
Cam05g0496 Cam-Chr5:4389238 Cam10g0535 Cam-Chr10:7883624 8.50E-28 dispersed
Cam05g0496 Cam-Chr5:4389238 Cam05g1646 Cam-Chr5:24234879 1.00E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51865 PF01012 ETF 6.90E-44 CL0039 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0496 K03521 - csv:101210570 436.417