Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0505 ATGGAGCCAAACAGCATTCTACAAGAGAAAGTCAAGAAGGTTCGATCCGCGGTCGGGCCCGACTTGCCGGATTCCTTCATTCAACGGACGCTGTTGACAAGCGACGGTGACATACACGAGGCTATTAAATACATTCTTCAAAACCCTGGGTTTTTTACCAGGCCATTGTCTGTTGTACGGACGGTCACTAGCACCGGTGCTCGAGTTTCAACACAGTTCATGCAGGATGATTCTATGGAGTCCGAGGAGGTAGCGAAACCGACGGTACAAGTCAAGGAGGAATCGGGTTTCGGGTTTGAAGATCAAGGCATAGAGAACAGGGGAGTGAGCTCGGATCGTCCAGAGGGTTTGCCAAAGGCCATCGGAACGTGGGAAACGAGATTCGATGAGTTTCTTAAGCAGACAAACACGAAAGTGATGAGCGATGAGAAGTATAGCAAGATCCCTGAGGGAAATCCGGCTGCGAAGATTCAAGTAAAGGAGAAAGCAGTTGAGACGAATGCACAACCTGGTGCTAACACAAATGTGAGAGTAAAAGAAGAACCAGATTTGGAGTTTAAGAACAGAGTATTTGCAAGAGAAGCAAGCTCTAGGACTGAATATTTCGCAAAGTCGGTTTCAAGTACACCAAGAACGAATTCGGTGGGTTCAGATGGCATGCAGAAGAATGGGACCTTGTCTAATGATGGGAGGTGCAAGATTGACGATGGGGATTTCCCTATTGAGCCTGATTGGTTTTTGGTGGGAAGGACAGTGGTCACAGCCATGTCCACCACGAAAGGGGATAAATTAGCAGATAATGAACTAGTTAATTTTGCATTTCCTTCTTCAAATTCAAGATTCAATGCTCAATGGATTGTTCGCTTCTCAACTAAAAGAAGTGGAGAGATTGGTCGCTTACCGATGGAGTGGGCAAAATGTGTAGTTCCACTTGTCGACTCCCGGAAAGTTAAAATTCTTGGACGGTGTATAGCCGCACCAGGAAACCTTCACATAATGCAAGAAATCCTTCTATACGTTAGCTTTTATATCCATAGTTCGGTATTCTCGGACATCGATACAGTTACATGGAAGTTGGAGGCTACACACATTGACTCTACAATTTATCCTCTTCTTACCCTTTTCGAATTACTGAAAATCACACCGTACCAGAAGGCTGAATTTACACCAGAAGAACTTGATTCAAGGAAGCGTCTGCTGAAGCTTGAAGATGATCCTGATGAAGCGGCATCAATGCTACCTATTGTGAAGCGGAGAAAGGGTTCCCAGCAATTTGCCGATCAAAACAAAGATGACCAAACTCTTAATGAATCATCACTGACTAAGCTTGTTGGTGCTTCAGATATGTATAATTTGGATGAAATGGAGCCTCCACGTACACTGACATGTGATCTTAGGCCTTATCAGAAGCAAGCTCTATTCTGGATGTCTGAGTTAGAGAAGGGGATCGATGTTGAGAAGGCTGCACAAACCCTTCATCCATGCTGGTCAGCCTATCGCATCTGTGATGAGAGAGCCTCCTCAATCTATGTAAACATTTTCTCTGGGGAATCAACTACAAAATTCCCAACTGCAACACAGATGGCAAGAGGAGGAATTCTTGCGGATGCAATGGGGCTTGGAAAGACCGTTATGACAATTGCTCTTATACTTGCGAGGATGGGCAAAGGATGCCCTAATGACCAAAAGCCAGCAGTGAATAAGAATGTTACCACAGAGACAAAAAGTCAGAAATCCACAACTAAAGCTAGGGGTGGGACCCTTATTGTATGTCCAATGGCTTTGCTGGGCCAATGGAAGGAGGAGCTTGAAATACATTCAGAGCCTGAAAGTATTTCCATATTTGTTCACTATGGTGGTGATAGAACCAACAATCCAGAGGTGCTGTCAGGATATGATGTTGTCTTGACAACGTATGGTGTCCTAACATCGGCCTATAAGAGTGATGGAGAGTTCAGTATTTACCACAGAGTTGATTGGTACAGAGTGGTGCTAGATGAAGCCCATACAATTAAATCATCAAAGACACAAACTGCCCAGGCTGCTTTTGCACTGAACTCATATTGCCGGTGGTGTCTTACTGGAACCCCCCTCCAGAATAACTTGGAAGACCTTTTCAGCCTCTTATGCTTCTTGCGTGTGGAACCATGGTGCAATTGGGCATGGTGGAACAAGTTGATTCAAAGGCCTTATGAAAATGGTGATCCTAGAGGCTTGAGATTGATCAAGGCTATCCTGAGGCCACTTATGTTGAGGAGAACTAAAGATACAAAGGATGCAGAAGGAAGGCCTATTCTTGTTCTCCCTCCTACTGATATTCAAACCGTCACATGTGGACAGTCTAAGGCTGAACGTGATTTTTATGATGCACTTTTTAAGAGATCAAAAGTCCAGTTTGATCAGTTTGTAGCACAAGGAAAGGTTCTCCACAACTATGCAAACATCCTCGAGCTCTTGCTTCGACTTAGGCAGTGTTGCAACCACCCATTTCTTGTAATGAGCCGAGGAGATTCACAACAATATGCCAACTTGAACAAGCTTGCAAGAAAGTTCCTTGAATCCAACAGTAATTCTACAACAATGGAGCAGGCTGCACCGACCAGAGCATATGTTGAAGAGGTAGTTGAGTGCATTCGGCGAGGTGAAAACACCGAGTGCCCAATATGTATGGAGTTTGCCGACGATGCAGTGCTCACCCCATGTGCTCACAGGATGTGTAGGGAGTGTCTCCTCTCAAGCTGGAGGACCCCGACATGTGGGCTCTGCCCAATTTGTAGGCAATTGGTGAAGAAAACTGACCTCATAACATGTCCAGCAGAAAACCCTTTTCGTGTGGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAAGTATCAAAACTGCTGGAATGCTTGGAACAAATTAATCAGTCGGGTTCTGGTGAAAAGAGCATTGTTTTTAGCCAGTGGACTACATTTTTTGATCTCTTAGAGATTCCCTTGAAGAGGAAACGAATTGGATTCTTCAGATTCGATGGGAAACTGTCGCAGAAGCATAGGGAAAGAGTTCTAAAAGAGTTCAGTGAAAGCAAGGAGAAAAAGGTGATGCTAATTTCTCTAAAAGCTGGTGGGGTTGGATTGAATCTAACCGCAGCTTCAAATGTCTTCATAATGGATCCATGGTGGAATCCTGCGGTTGAGGAACAAGCAATCATGAGGATCCATCGTATTGGTCAGAAGAGGACAGTCCGTGTGAGAAGATTCATTGTCAAGGACACCGTGGAGGAACGCATGCAACAAGTTCAGGCCAGAAAGCAGCGGATGATCGCCGGTGCCCTCACTGACGAGGAAGTTCGAACGGCCAGGATTGAAGAGCTCAAGATGCTCTTTAGATAG 3372 44.93 MEPNSILQEKVKKVRSAVGPDLPDSFIQRTLLTSDGDIHEAIKYILQNPGFFTRPLSVVRTVTSTGARVSTQFMQDDSMESEEVAKPTVQVKEESGFGFEDQGIENRGVSSDRPEGLPKAIGTWETRFDEFLKQTNTKVMSDEKYSKIPEGNPAAKIQVKEKAVETNAQPGANTNVRVKEEPDLEFKNRVFAREASSRTEYFAKSVSSTPRTNSVGSDGMQKNGTLSNDGRCKIDDGDFPIEPDWFLVGRTVVTAMSTTKGDKLADNELVNFAFPSSNSRFNAQWIVRFSTKRSGEIGRLPMEWAKCVVPLVDSRKVKILGRCIAAPGNLHIMQEILLYVSFYIHSSVFSDIDTVTWKLEATHIDSTIYPLLTLFELLKITPYQKAEFTPEELDSRKRLLKLEDDPDEAASMLPIVKRRKGSQQFADQNKDDQTLNESSLTKLVGASDMYNLDEMEPPRTLTCDLRPYQKQALFWMSELEKGIDVEKAAQTLHPCWSAYRICDERASSIYVNIFSGESTTKFPTATQMARGGILADAMGLGKTVMTIALILARMGKGCPNDQKPAVNKNVTTETKSQKSTTKARGGTLIVCPMALLGQWKEELEIHSEPESISIFVHYGGDRTNNPEVLSGYDVVLTTYGVLTSAYKSDGEFSIYHRVDWYRVVLDEAHTIKSSKTQTAQAAFALNSYCRWCLTGTPLQNNLEDLFSLLCFLRVEPWCNWAWWNKLIQRPYENGDPRGLRLIKAILRPLMLRRTKDTKDAEGRPILVLPPTDIQTVTCGQSKAERDFYDALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRGDSQQYANLNKLARKFLESNSNSTTMEQAAPTRAYVEEVVECIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPICRQLVKKTDLITCPAENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEKKVMLISLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRTARIEELKMLFR 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4490091 4495859 + CaPI482276_05g005050.1 Cam05g0505 125909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0505 1123 SUPERFAMILY RING/U-box 874 931 - -
Cam05g0505 1123 CDD CUE 20 46 - -
Cam05g0505 1123 SMART ultradead3 461 732 IPR014001 -
Cam05g0505 1123 CDD DEXDc_SHPRH-like 465 753 - -
Cam05g0505 1123 FunFam DNA repair protein RAD5B 520 754 - -
Cam05g0505 1123 SMART helicmild6 987 1070 IPR001650 -
Cam05g0505 1123 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 172 1122 IPR050628 GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0008094(PANTHER)
Cam05g0505 1123 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 715 IPR014001 -
Cam05g0505 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1113 IPR027417 -
Cam05g0505 1123 SMART ring_2 886 925 IPR001841 -
Cam05g0505 1123 SMART HIRAN_2 248 344 IPR014905 GO:0003676(InterPro)|GO:0008270(InterPro)|GO:0016818(InterPro)
Cam05g0505 1123 Gene3D - 769 1123 IPR027417 -
Cam05g0505 1123 CDD RING-HC 885 925 - -
Cam05g0505 1123 Gene3D - 519 754 IPR038718 -
Cam05g0505 1123 Pfam Helicase conserved C-terminal domain 958 1070 IPR001650 -
Cam05g0505 1123 Pfam HIRAN domain 249 340 IPR014905 GO:0003676(InterPro)|GO:0008270(InterPro)|GO:0016818(InterPro)
Cam05g0505 1123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 879 935 IPR013083 -
Cam05g0505 1123 MobiDBLite consensus disorder prediction 202 229 - -
Cam05g0505 1123 ProSitePatterns Zinc finger RING-type signature. 901 910 IPR017907 -
Cam05g0505 1123 MobiDBLite consensus disorder prediction 202 228 - -
Cam05g0505 1123 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 956 1123 IPR001650 -
Cam05g0505 1123 Pfam Zinc finger, C3HC4 type (RING finger) 883 931 - -
Cam05g0505 1123 Pfam SNF2-related domain 468 830 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cam05g0505 1123 ProSiteProfiles Zinc finger RING-type profile. 886 926 IPR001841 -
Cam05g0505 1123 CDD SF2_C_SNF 954 1081 IPR049730 -
Cam05g0505 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 753 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0505 K15505 - - csv:101214691 1990.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1330 Cam-Chr1:25641374 Cam05g0505 Cam-Chr5:4490091 3.90E-298 dispersed
Cam01g2340 Cam-Chr1:35496954 Cam05g0505 Cam-Chr5:4490091 5.10E-87 dispersed
Cam02g0937 Cam-Chr2:13436205 Cam05g0505 Cam-Chr5:4490091 4.90E-84 dispersed
Cam05g0505 Cam-Chr5:4490091 Cam11g0586 Cam-Chr11:7405391 1.80E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0310 Cone4ag0312 Lsi05g01699 . . Cme06g00516 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00464 Cam05g0505 Cec05g0518 Cco05g0519 Clacu05g0506 Cmu05g0482 Cre05g0546 . Csa03g01237 Chy06g00490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g0937 . 79 873 RAD5/RAD16-like Gene Family AT1G05120 59.4 2.9e-270 928.3
Cam01g2340 . 288 1231 RAD5/RAD16-like Gene Family AT1G11100 52.7 2.6e-244 842.4
Cam01g0808 . 230 710 RAD5/RAD16-like Gene Family AT1G11100 52.0 2.5e-122 437.2
Cam01g0811 . 1 290 RAD5/RAD16-like Gene Family AT1G11100 50.7 7.0e-72 269.6
Cam01g2340 . 401 1132 RAD5/RAD16-like Gene Family AT1G50410 50.5 3.0e-190 662.5
Cam01g0808 . 11 708 RAD5/RAD16-like Gene Family AT1G50410 54.5 3.7e-188 655.6
Cam01g2340 . 392 1231 RAD5/RAD16-like Gene Family AT1G61140 61.4 4.4e-271 931.4
Cam01g0808 . 195 709 RAD5/RAD16-like Gene Family AT1G61140 53.9 2.4e-139 493.8
Cam01g0811 . 1 292 RAD5/RAD16-like Gene Family AT1G61140 55.1 3.0e-78 290.8
Cam01g1330 . 1 1039 RAD5/RAD16-like Gene Family AT5G22750 70.6 0.0e+00 1454.9
Cam05g0505 . 244 1122 RAD5/RAD16-like Gene Family AT5G22750 56.1 1.8e-295 1012.3
Cam05g0505 . 233 1123 RAD5/RAD16-like Gene Family AT5G43530 72.4 0.0e+00 1328.2
Cam01g1330 . 128 1038 RAD5/RAD16-like Gene Family AT5G43530 54.9 1.1e-286 983.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014742 0 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 19
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51866 PF00176 SNF2_N 1.10E-81 CL0023 Cam TR