Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0529 ATGGCTTTATTACACAGTCGTTTATGCCATGCCACGAACTTCTTCGACACATTTCAAACTTCCTTCTCTGAATTCCATGGCTCTCAAGTTTTACTGAAGTGCGGTTCGTCGATTGTCTTCAGAAACCGCTCTTTCTGCTCTCCGTTTTATGCTTTCACCACCGATACATTTTCCAATCGAATTTCGTATGGGAGTTTAGGTTCACGAAAACCCATTTCCCGATATAGTTTTGGGAGAAATGTATGTCGTGCTAGTTGGATAGATAGGTGGAACGAAACCGCGAAACAGAATCGCCCGAAACCACCTCGGGCTGTGTTGGATTATCCCAGTAGCGATGACAACGAAGTTTCAATTTCAAGTTCATCGAGGAGTTATAGAGATGGTAGTTGGATTGATGATGATGGAAGAGAGGGAAGTACAATGGAGAAGATTGTGAGGAAATTGAAGAAATTTGGGTACATAGACGATGAGAATAAAGAGAAGGGGCAAGAGAGAGCCATCGAAAAAGGGTCTGTGGAGGACATATTTTATGTTGAGGAAGGAATGTTGCCTAATACTCGAGGTGGGTTTTCTGAGGAATCGCCTCTGGGAGATGAGAACATGTTTGGAAGTAATGGGGAAGTTAGGTTTCCATGGGAGAAGCCAAAGGAAAAGGAAGACGGAGATTGGGATTCAACTAGGAGAAGGGGCAGGACATCTTTGGCAGAATTGACCCTTCCTGAGCCAGAATTGAGAAGGCTGAGGAACTTGACTTTCCAGAAAAAGCACAAGATGAAGATAGGCGGTGGAGGAGTGACTCAGGCTGTTGTGGATGTCATTCATGAAAAGTGGAAATCTTCAGAAATTGTGAGGCTTAAAATTGAAGGTCCTCCTGCACTTAACATGAAAAGGATGCACGAGATATTGGAGAGAAAAACTGGTGGACTGGTTATCTGGAGGTCGGGAACTTCATTGTCTCTATATAGAGGTGTAAGCTATGAGCTCCCTGAAGCACCACAATTTAACAAACGGATTTACAAGAGAAATATGATCACTACTTTGTCTGGAACTGGTGGCAGTGCTATAGTTCCTTCTGAATATTCTTCTCACGGTCATGTATATGAGTCGCAACGAAAAAGAGCAGAAACTTCCGCAGATGGTGAACAGTGCAGCGAACAATTGACAGAAGTACAAGTGAATTATGAGGATGAAGTAGATAAGTTACTGGATAGTTTGGGTCCAAGATACACAGACTGGCCAGGATTGGATCCTTTACCTGTTGATGCAGATTTGCTCCCAGGAGTAGTTCCTGATTATGAACCTCCATTTAGAATACTTCCCTATGGAGTGAGATCTTCTCTTGGAGTTAAGGAGGCTACAGCCTTAAGACGACTTGCCAGAAGACTTCCTCCTCATTTTGCCCTAGGCAGAAACAGGCAGCTGCAAGGTTTAGCCATTGCAATGGCCAAATTGTGGGAACGAAGTTCAATTGCAAAAATTGCCCTGAAACGAGGTGTGCAGCTGACTACTAGCGAGAGAATGGCTGAAGAGATCAAGAAATTGACAGGAGGCATTCTTCTGTCAAGAAACAAAGACTTTCTGGTATTCTATAGAGGAAAGAGTTTCTTGTCGCCTGAGGTCACTGAAGCTTTGCTAGAAAGGGAGAGGCTGGCAAAGTCTCTACAAGATGAAGAAGAACAGGCTAGGTTGAAAGCGTCAGCCTTGGTGGTACCTTGCATTGAGAAAACAGGGCAATCTGGAACCGCAGGTTCTCTAGAGGAAACACTAGATGCCGATGCTAAATGGGGAAAGCCTCTAGATGATGAGCACAAGGAAAAAGTAATGCAGGAAGCTGAACGATTGAGGCACACTGACCTAGTCAGGAAGTTGGAACGGAAGCTTGCTTTTGCTGAAAGAAAATTAGTGAAAGCTGAGCAAGCATTATCTAAGGTAGAAGCATTTATGACACCGGCAAAGCTGGCTGCACCTGATAGCATAACTGAGGAGGAAAGATTTATGTTTCGTAAGCTTGGTCTACGAATGAAAGCTTTCTTGCTTCTAGGTAGGCGTGAAGTTTTTGATGGCACAGTGGAGAACATGCACTTGCATTGGAAGTATCGTGAATTGGTGAAGATCATGATAAAAGCTAATTCCTTTGATCATGTCAAAAAAATTGCTTTGCAACTCGAAGCTGAGAGTGGAGGTGTCCTAGTTTCTATTGACAAAGTCTCCAAAGCATATGCTATAATCGTTTATCGAGGAAAGGATTATCAACGGCCATCTTTGCTGAGACCCAAGAATCTTTTGACAAAGAGGAAGGCTCTAGCACGCTCGATCGAGCTTCAAAGGCATGAGGCTTTGCTGAAACATATATCAGCAATGCAGAGTAGAGTGGACAAACTAAAATCCGAAATCGAACAAATGGAGAAAGTGAAAGACCGAGGAGATGAAGTATTATACAATACACTGGATTCTGCTTATCCTACCGACAACGATTCAGAGGAAGAAGATTACGGTACATATACCGAGGCATATGGTCAGAGTAGGGAAGTTGAAGATGAAGATAATATCATGGCTAGCGACGAGTACCTGGAAGGGGATTTTCCACATGGAATCCAAGTACAAGAATCTGAGCAAATCAAGAAAGAGGCAAATGATGAGAGTTACAAGGAACTTGGCTTCCTCGAAGTGAATCATTTATGA 2682 43.25 MALLHSRLCHATNFFDTFQTSFSEFHGSQVLLKCGSSIVFRNRSFCSPFYAFTTDTFSNRISYGSLGSRKPISRYSFGRNVCRASWIDRWNETAKQNRPKPPRAVLDYPSSDDNEVSISSSSRSYRDGSWIDDDGREGSTMEKIVRKLKKFGYIDDENKEKGQERAIEKGSVEDIFYVEEGMLPNTRGGFSEESPLGDENMFGSNGEVRFPWEKPKEKEDGDWDSTRRRGRTSLAELTLPEPELRRLRNLTFQKKHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKIEGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRNMITTLSGTGGSAIVPSEYSSHGHVYESQRKRAETSADGEQCSEQLTEVQVNYEDEVDKLLDSLGPRYTDWPGLDPLPVDADLLPGVVPDYEPPFRILPYGVRSSLGVKEATALRRLARRLPPHFALGRNRQLQGLAIAMAKLWERSSIAKIALKRGVQLTTSERMAEEIKKLTGGILLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDEEEQARLKASALVVPCIEKTGQSGTAGSLEETLDADAKWGKPLDDEHKEKVMQEAERLRHTDLVRKLERKLAFAERKLVKAEQALSKVEAFMTPAKLAAPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKKIALQLEAESGGVLVSIDKVSKAYAIIVYRGKDYQRPSLLRPKNLLTKRKALARSIELQRHEALLKHISAMQSRVDKLKSEIEQMEKVKDRGDEVLYNTLDSAYPTDNDSEEEDYGTYTEAYGQSREVEDEDNIMASDEYLEGDFPHGIQVQESEQIKKEANDESYKELGFLEVNHL 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4675723 4680305 - CaPI482276_05g005290.1 Cam05g0529 125933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0529 893 FunFam CRM-domain containing factor CFM3B, chloroplastic 658 760 - -
Cam05g0529 893 MobiDBLite consensus disorder prediction 112 126 - -
Cam05g0529 893 SUPERFAMILY YhbY-like 659 756 IPR035920 -
Cam05g0529 893 MobiDBLite consensus disorder prediction 205 229 - -
Cam05g0529 893 ProSiteProfiles CRM domain profile. 445 542 IPR001890 GO:0003723(InterPro)
Cam05g0529 893 SMART CRS1_YhbY_2 447 531 IPR001890 GO:0003723(InterPro)
Cam05g0529 893 SMART CRS1_YhbY_2 239 322 IPR001890 GO:0003723(InterPro)
Cam05g0529 893 SMART CRS1_YhbY_2 659 746 IPR001890 GO:0003723(InterPro)
Cam05g0529 893 FunFam CRS2-associated factor 1, chloroplastic 446 542 - -
Cam05g0529 893 Coils Coil 540 560 - -
Cam05g0529 893 Pfam CRS1 / YhbY (CRM) domain 659 746 IPR001890 GO:0003723(InterPro)
Cam05g0529 893 Pfam CRS1 / YhbY (CRM) domain 241 322 IPR001890 GO:0003723(InterPro)
Cam05g0529 893 Pfam CRS1 / YhbY (CRM) domain 450 531 IPR001890 GO:0003723(InterPro)
Cam05g0529 893 Coils Coil 777 811 - -
Cam05g0529 893 SUPERFAMILY YhbY-like 447 538 IPR035920 -
Cam05g0529 893 SUPERFAMILY YhbY-like 238 327 IPR035920 -
Cam05g0529 893 Gene3D - 658 760 IPR035920 -
Cam05g0529 893 Gene3D - 446 542 IPR035920 -
Cam05g0529 893 Gene3D - 237 337 IPR035920 -
Cam05g0529 893 ProSiteProfiles CRM domain profile. 657 757 IPR001890 GO:0003723(InterPro)
Cam05g0529 893 MobiDBLite consensus disorder prediction 210 229 - -
Cam05g0529 893 Coils Coil 613 647 - -
Cam05g0529 893 FunFam CRS2-associated factor 1, chloroplastic 238 333 - -
Cam05g0529 893 ProSiteProfiles CRM domain profile. 237 333 IPR001890 GO:0003723(InterPro)
Cam05g0529 893 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 76 840 IPR045278 GO:0000375(InterPro)|GO:0003729(InterPro)
Cam05g0529 893 MobiDBLite consensus disorder prediction 95 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0529 K27708 - - csv:101216848 1437.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1566 Cam-Chr3:30602726 Cam05g0529 Cam-Chr5:4675723 8.20E-156 dispersed
Cam05g0529 Cam-Chr5:4675723 Cam10g1220 Cam-Chr10:25576883 1.10E-123 dispersed
Cam05g0529 Cam-Chr5:4675723 Cam06g1619 Cam-Chr6:27644066 4.80E-135 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30