Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0542 ATGCATCCATTGGGAACACATTATAAAAACCTAATTTTCCAATGCCTCCATTGCAACTATAGTACGCTTCACTTCCAAGGCACTTTCAGCGCCGCCACCGCCGCCGCTATGGAGACGGGGCTCCGGCCAACGCTCGCCGCAGCTCCACCTTCCACCGGCGCCACCCTTCTCGGAAAGTACCAATTAGGCCGCCTTCTCGGTCGCGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAACTCCACCGTTGCCATCAAAATCATCGACAAATCCAAAACGGTCGGCGCCGCTCTTGAACACTGCATAGTCCGAGAGGTCGCCGCCATGCGCCGCCTCGATCACCACCAAAACATCCTCAAAATCCACGAAGTCATGGCGACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGAGGCGAACTCTTCGCCAAAATCTCCCGCCGCGGGCGATTCACCGAACCCGTCGCCCGCCGGTACTTCCAACAACTCGTCTCAGCCCTCAAGTTCTGCCACGAAAACGGCGTCGTTCACCGCGATGTGAAGCCGCAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAATCTCCGATTTCGGCCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTGCTCCACACGGCTTGTGGAACTCCAGCGTACTCAGCGCCGGAGGTCATGATCCGGCGCGGTGGCGGCGGATACGACGGTGGAAAGGCCGACGCCTGGTCTTGTGGAGTGATTTTATTCGTATTGCTCTCTGGGTTTCTCCCTTTCGACGACAGTAACCTAGCGGGGATGTACAAGAAAATCCACCGGCGAGAATTTCAAATCCCTAATTGGATATCGAAACCGGTCCGATTCCTAATATATCATCTCCTCGATCCGAATCCCAAAACGAGAATGAGCATTGAGACGTTAATGCAAAACCCCTGGTTCAAGAAATCGCTGCAATTGAAACATAGTAATGAAAGTTTATTGCAACCGATGAGGGATTATCGATCGGGGACAGAGAGGGGAATTAGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGGCGGAGAAAAGGGCGGAGAGGAGGTTTACGTCGAGGGCGACGGTGATGGAGGTGGAGGAGAGGGTGAAGGAGATGGGCGGAGAGTTGGGGTACAAGGTGGAGGCGGGGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTGGTGGTGGAAGTGGTGAAGGTGGCGGTGGCTCCGGTGACATTGACGATGGTGGAGGTGAGGGTGGTGAAAGGAGGGGAGGAGTTTGAAGAACTCCATTGGAGGTGTTTTGAAGGTAAACTTGAAGGATTTGCAGTTCCATGGCAGAGGAAATGCAATATGTGA 1422 54.01 MHPLGTHYKNLIFQCLHCNYSTLHFQGTFSAATAAAMETGLRPTLAAAPPSTGATLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAIKIIDKSKTVGAALEHCIVREVAAMRRLDHHQNILKIHEVMATKSKIYLVVEFAAGGELFAKISRRGRFTEPVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMIRRGGGGYDGGKADAWSCGVILFVLLSGFLPFDDSNLAGMYKKIHRREFQIPNWISKPVRFLIYHLLDPNPKTRMSIETLMQNPWFKKSLQLKHSNESLLQPMRDYRSGTERGIREMNAFDIISMSSGLDLSGLFETAEKRAERRFTSRATVMEVEERVKEMGGELGYKVEAGAKGGAIGMGKGRVVVVVEVVKVAVAPVTLTMVEVRVVKGGEEFEELHWRCFEGKLEGFAVPWQRKCNM 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4774604 4776025 - CaPI482276_05g005420.1 Cam05g0542 125946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0542 473 Gene3D Transferase(Phosphotransferase) domain 1 146 339 - -
Cam05g0542 473 CDD CIPK_C 350 454 - -
Cam05g0542 473 Pfam Protein kinase domain 60 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0542 473 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Cam05g0542 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g0542 473 FunFam Aurora kinase A 53 144 - -
Cam05g0542 473 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524(InterPro)
Cam05g0542 473 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0542 473 Pfam NAF domain 348 403 IPR004041 GO:0007165(InterPro)
Cam05g0542 473 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 55 402 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam05g0542 473 SMART serkin_6 60 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0542 473 FunFam Non-specific serine/threonine protein kinase 51 341 - -
Cam05g0542 473 ProSiteProfiles NAF domain profile. 344 368 IPR018451 GO:0007165(InterPro)
Cam05g0542 473 SUPERFAMILY Protein kinase-like (PK-like) 57 343 IPR011009 -
Cam05g0542 473 Gene3D Kinase associated domain 1, KA1 344 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0542 Cam-Chr5:4774604 Cam06g1365 Cam-Chr6:25096449 1.60E-92 dispersed
Cam05g0542 Cam-Chr5:4774604 Cam06g0661 Cam-Chr6:8896762 1.50E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85165 PF00069 Pkinase 2.70E-68 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0542 K12761 - csv:101217555 726.087