Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0565 ATGGGTAATGCTGATTTTGAATGCCCTCACAGAGTAGCCATTCCTCCAAAAAAGCCCTTCTTCCACTCCTTATCTTCCAATCTCAAAGAAACCTTCTTCCCCGATGACCCTTTCAAACAATTCAAAAACCAACCTTTGCCCACCCAAATCCTTCTCTGGCTTAAATACTTCATCCCCTTTCTTGATTGGGCTCCTCGTTACACTTTCGACTTCTTCAAAGCCGACCTCGTCGCTGGTATCACCATCGCCAGTTTGGCCGTCCCTCAGGGTATCAGCTATGCCAATCTCGCCAGTATCCCTCCCATCATTGGACTTTATTCCAGCTTCATCCCACCCTTGGTATACGCCATGTTCGGAAGCTCCAAAGATATAGCAGTGGGGACGGTGGCAGTAGCTTCCTTGCTTATGTCTGCCATGTTGGGGAAGGAAGTCAACCCGGTAGAGCATCCAAAGCAATACGTTCAATTGGTTTTCACTGCCACCTTCTTTGCAGGGGTTTTTCAGGCTTCTCTCGGGTTTCTCAGATTAGGGCTGATTGTGGACTTTTTGTCGCATGCAACAATAGTGGGCTTCATGGGTGGTGCAGCAACCGTGGTTTGTCTTCAGCAATTGAAAGGCATAACGGGATTGCTTCATTTTACGCATGAGACTGATATTGTATCCGTTATGCGCTCTCTTTTCTCTCAAATTCACAAGTGGAGATGGGAAAGTATTGTGTTGGGTTGCTGTTTTCTCTTCTTTCTCCTCCTCACTAGATACTTGAGCAAAAAGAAAGCAATCTTCTTTTGGATAAATGCATTGGCGCCTTTGACTTCGGTCATCTTGGGAAGTCTTCTCGTTTACTTAACCCATGCTGAAAAGCATGGAGTTCAAGTGATTGGGAATTTGAAGAAAGGGTTGAATCCCCCTTCTGTATCTGATTTAGTATTTGGATCCCCTCATCTCGCCGTTGCCATCAAAACAGGGATCATCATCGGAATCATTGGCCTCGCTGAAGGAGTTGCAGTGGGAAGAAGTTTTGCTGCTTTTAAGAACTACCACATTGATGGAAACAAGGAGATGATAGCATTTGGGATGATGAACATTGTTGGTTCTTGCACTTCTTGCTACCTTACTGCAGGACCATTTTCGAGGACTGCGGTGAATTTCAATGCAGGATGTAAAACTGCGGTCTCAAATATTGTCATGGCAATTGCTCTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACACCCCTGGTGGTGCTTTCCTCCATAATCATCACTGCTATGCTCGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAAATTGACAAATTTGACTTTGTCGTCTGCCTCGGTGCATATATCGGTGTCGTCTTTGGCAGCGTTGAAACGGGCTTGATTGTTGCGATTACACTCTCTTTGTTAAGGGTGCTTCTAATCATCGCGAGGCCAAGAACTTTAGTATTAGGCAACATTCCCAACTCGACAATTTACAGAAGCATCGATCAATACCCAACAGCCAAAAATGTGCCTGGAATTCTCATCCTCCAATTGGAGGCCCCAATCTATTTTGCCAACTCAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACAGATGAAGAACAGAGGATAAAATCATCTGGAGAAACCAGCTTGCAGTATATAATTCTAGACATTTCCGGCGTAAGTAGCATTGACTCAAGTGGAATCAGCATGCTTGAAGAGGTTAAGAAGAGTACTGAAAGAAAGGGTCTCAAACTTGTGCTTGCAAATCCAAGAAGTGAAGTGATAAAAAAGTTAAACGAAGCAAAGTTCATCGAGGCGATCGGACAGGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACAGCTTGCAACTTCATGCTCCACACTTGCAAGCCAAATCCTGTTGCTGCTGAATTAGATTCACCTGTGTAG 1941 44.36 MGNADFECPHRVAIPPKKPFFHSLSSNLKETFFPDDPFKQFKNQPLPTQILLWLKYFIPFLDWAPRYTFDFFKADLVAGITIASLAVPQGISYANLASIPPIIGLYSSFIPPLVYAMFGSSKDIAVGTVAVASLLMSAMLGKEVNPVEHPKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGITGLLHFTHETDIVSVMRSLFSQIHKWRWESIVLGCCFLFFLLLTRYLSKKKAIFFWINALAPLTSVILGSLLVYLTHAEKHGVQVIGNLKKGLNPPSVSDLVFGSPHLAVAIKTGIIIGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTAGPFSRTAVNFNAGCKTAVSNIVMAIALMITLLFLTPFFHYTPLVVLSSIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLIVAITLSLLRVLLIIARPRTLVLGNIPNSTIYRSIDQYPTAKNVPGILILQLEAPIYFANSNYLRERLSRWITDEEQRIKSSGETSLQYIILDISGVSSIDSSGISMLEEVKKSTERKGLKLVLANPRSEVIKKLNEAKFIEAIGQEWIYLTVGEAVTACNFMLHTCKPNPVAAELDSPV 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5020315 5025718 + CaPI482276_05g005650.1 Cam05g0565 125969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0565 646 PANTHER SULFATE TRANSPORTER 27 626 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g0565 646 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Cam05g0565 646 Pfam Sulfate permease family 72 451 IPR011547 GO:0016020(InterPro)
Cam05g0565 646 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Cam05g0565 646 Gene3D STAS domain 483 628 IPR036513 -
Cam05g0565 646 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
Cam05g0565 646 Pfam STAS domain 504 622 IPR002645 -
Cam05g0565 646 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cam05g0565 646 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g0565 646 FunFam Sulfate transporter 31 483 629 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0565 Cam-Chr5:5020315 Cam06g1136 Cam-Chr6:21621796 4.80E-201 dispersed
Cam05g0565 Cam-Chr5:5020315 Cam09g0713 Cam-Chr9:7098159 1.00E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0565 K17471 - csv:101203205 1185.24