Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0566 ATGAAAACTTTAAGCTCCCCTCTCTCAAAATCTCTCTTCCTCATCTCCATCCTCATCCTCCTCTCCCAACCTTCCCATCAAGCAACTCCGTCACCGACGCCATTTCTCCCAAACCCCAGACTTCTTAAGGCCTACTCCGCTCTCCAAGCTTGGAAACATGCCATCACCGCCGACCCGACCAACTTCACCTCCGATTGGTACGGCCCCAATGTCTGCAACTACTCCGGTGTCTTCTGCGCCCCCGCCCCCGACGACCCCGACATCCTCACCGTCGCCGGGATCGACCTCAACCACGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTCACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGCACTATCCCCAATTCCTTCCGGTGCCTCACTCTTCTCTTCGAGCTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTCTCTCTCCCAGCACTCAAATTCCTCGATATTCGATTCAACAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACTTGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAAATTTTCCCTACCGGAAAATATCGGCAATTCCCCTGTTTCTGTCCTGGTTTTTGCTAATAACAACATCAATGGCTGTCTCCCCTCTAGTTTATCCAATATGAACAACACACTCAATGAAATTATAATCACGAATAGTGGGTTGATTGGGTGTTTACCGCCGGAAATTGGGTCTTTGAGCAATCTGACCGTCTTCGATGTTAGTGACAACAATCTCGTCGGACCGTTGCCGGAGACGATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAGATTCCAGCGAGTATTTGTTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGGTGTACTCGTCGGCCGCCACCACCGCCGCCTCCGCCGCCATCTTATTGGTGA 1137 51.1 MKTLSSPLSKSLFLISILILLSQPSHQATPSPTPFLPNPRLLKAYSALQAWKHAITADPTNFTSDWYGPNVCNYSGVFCAPAPDDPDILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNKFHGDLPSPLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLNEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPERPLQRSPEECKAFYSYPVDCGVFGCTRRPPPPPPPPPSYW 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5031096 5032232 + CaPI482276_05g005660.1 Cam05g0566 125970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0566 378 Pfam Leucine rich repeat N-terminal domain 46 79 IPR013210 -
Cam05g0566 378 Pfam Leucine Rich Repeat 139 159 IPR001611 GO:0005515(InterPro)
Cam05g0566 378 FunFam Leucine-rich repeat extensin-like protein 1 45 206 - -
Cam05g0566 378 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 27 372 IPR051582 -
Cam05g0566 378 Pfam Leucine rich repeat 233 292 IPR001611 GO:0005515(InterPro)
Cam05g0566 378 Gene3D Ribonuclease Inhibitor 210 349 IPR032675 -
Cam05g0566 378 Gene3D Ribonuclease Inhibitor 43 209 IPR032675 -
Cam05g0566 378 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 231 319 - -
Cam05g0566 378 SUPERFAMILY L domain-like 44 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1617 Cam-Chr3:31169654 Cam05g0566 Cam-Chr5:5031096 1.70E-26 dispersed
Cam05g0566 Cam-Chr5:5031096 Cam07g0243 Cam-Chr7:3571961 2.10E-47 dispersed
Cam05g0566 Cam-Chr5:5031096 Cam06g1139 Cam-Chr6:21748379 1.30E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0566 - - - 0.0