Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0568 ATGAGTTTCTTGTATGATTGGGAAGAAGCAGCTGTTTCAGCCATTCTGGAGGTTTTTGGTCCCCTGGTTCGAAAAAAAGGGTTGGTTTCTGAAGTGTGTTTGAAGAATGAGATAATGCTTTTAACCTTTAGTTCTTTGTACTTTGGCGACTTTCTTGCTGATCCAAGCTCAGGACAGAGCTCATCACCAAATTTGAGAAAGTTCTATGTGGTTGGAGATCTGGATTCTGTCTGTTTTCCCCATCCTTTGGGTCAGTTGACTTCTGATGCTGTGAATCGACGTTCAAATCGTGCTATTCTGGCCTGGATCCGTTACCTCAACAATTGCTGGTGCAAGGACCAGGCTTTTCCAAGGTCTAAACATTTTGTGTGGTTGTTGTTTGCCGGAGTCATGGCAACCTTGATGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATTAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTTACAGACATGGATGCCAAAGTAAAAGCAATGATCAAACTCATCGAAGAAGATGCAGACTCATTTGCGAGAAGAGCAGAAATGTACTATAAGAAACGTCCAGAGCTTATGAAATTAGTTGAGGAATTCTACCGAGCCTACCGTGCTTTAGCTGAAAGATATGACCATGCAACTGCAGAGCTTCGTCATGCACATAAAACCATGGCTCAAGCATTTGACAACCAAATGCCTCCTTTTATGTTTTCTGACGAGTCTTCTGTTTCTGAAGCTGAATCCCACACACCAGAAATCCACCTCCCAAATCATGCACTGCACGACAAAGATGACTTCCACAAGGAGTTGGGGAGTTCATCGTCAACGAACCAACATCCATTAAGAATGGAAGGAGATAATGCTGGGGAATCTAATTCTTGCTCAAGTAAAGGGGGTTTGAAACAGCTCAATGAGATGTTCGCATCAAGAAAAAATGTGCCAGAAAATTTAGAGGTTAGTGAGGGAAGCACTGTATCGCAATTAGTTTTTCATGAAGGTGAATCTGATGACCAAAACTTGCAAAATGTAGAGCACCCTCAGTTATCAAGGAAAATTAATGGTCTCAACTCTCAGGTCCTGTGTGAGTCAGAAAGTAATGAAAAATTGGATGCTGAGCTTCAAAATTTAAGAAAAAGACTGAATCAGATGGAAGCTGAAAAGGAAGCTTTCTTTCTTAAATACCAGAATTCTTTGGAGAAGTTATCCAGCCTAGAGAATGAACTTAGTTCTGCTCAAAAGGATGCTGGTGGACTTGACGAAAGAGCGAGCAAAGCTGAAATTGAAATAAAAATATTGAAGGAAGCCCTTCTAGATCTGAAAGCAGAGAAGAATGCTAGCCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCTTAGAAAATCAATTATCTGTAGCCCAACAAGATGCTGAAGGACAGAATGAGAGAGCTGCTAAGGCAGAAATTGAAGTTCAGAACCTTGAGCAACAACTTTCCAGATTAGCAGCTGAAAAGGAGGTCAGTCTTCTTCAGTATGAACAATGCCTAAAGAAGATATCTGCCTTAGAGAACAAAATCTCTCTCTCTGAAGATTATGCAAGAATGCTTGATGAACAAATAAAAAGTTCAGAAACTGAAGTGGAAGCACTGAATAGAGCTCTTGTTGAACTGAATAAAGAGAAGGAAATAGTATCTCGACAATATGAGCAGTGCTTGGAGAAAATTGCGAAGATGGAAACTGAAATATCTTATGCTCAAGCTGATGCCCAACGTCTGAAAGGTGAACTTGTGATGGCCAATGCAAAACTGGAGACAACAGAAGAACGGTGTGCTCATTTGGAGCAGTCGAACCATTCGCTGCAGTTTGAGGCAGACAAACTTGTACAGAAGATTGCTATGAAGGATCAAGAGCTTGCAGAAAAGCAAGATGAGTTGAAGAAACTGCAGAGTCTAATGAACGAGGAGCAGTCCCGATTTGTACAAGTCGAGAACACTCTCCACACTCTGCAGAAGTTACATTGTCAATCGCAGGAGGAGCAGAGAGCTCTGACCTTGGAGCTTAAAAATGGTCTCATGATGCTGAAGGATTTGGATATATGCAAACATGGCATGGAGGAAGACCTTCAACGAGTTAAGGATGAAAACAAAATATTGAATGAACTGCATTTTTCTTCCAATACTTCAATGAAGAATTTAGAGGATCAATTATCTGGCTTGAAGGAGATGAAAGAGAAGCTTGAAGAAGTTGTTTCCCAGAAAGAAGAGCAGAGCAGCTTGCTTGAGAAAGAGATCCATCATTTGAGAGAAGAAATTAAGGGTTTGAGTGGAAGATACCAGGGCATAATGAGACAATTGGAGGCCGTAGGGTTGGATCCTTACTCCCTTGAATCTTCTGTAAAGGAATTTCAAGAGGAAAATGCCAAGCTGAGGGAGGCCTGTGAAAACGACAGGAACAAGATAGAAGCACTTTATGAAAAACTTAGTTATATGGATGAACTTGCAAAGGAAAATTCGATTCTCAAGGTATCTCTGGCTGAATTGAATGCTGAATTGGAGAGGTTAAGGGAGAAAGTCAAGGAATCCCAGGACCTTTCCCAGTTTACCCAGGGAGAAAAAACTACTCTTGTTGCAGAGAAATCTTCCTTGCTTTCACAATTGCAGAATGTAACTGAGAATATGTTGAAACTTTTAGAGAAGAACACATTGCTGGAAGACTCCCTATCTAGTGCAAATAAAGAGCTTGAAGGTTTAAGGGCAAAATCAAAGGGCTTGGAAGAATTCTGCCAGTTGCTCAAGGATGAGAGGTCCAATCTTTTGAATGAAAGAGGCGCACTGGTGGCTCAGCTTGAAAACATTGAACTGAGACTAGGAAACCTGGAAAAGAGGTTTACGAATCTAGAAGAGAAATGTGCTGATCTGGAAAATGACAAAGATTCTGCCTTACATCAAGTTGAAGAATTGAGGTTTTCCCTTCTCATGGAAGAACAAGAGCATACAAGTTACAAGCAGTTGACTGAGGCCAGACTTGCTGGTTTGGAGAACAATGTCCATAACCTACGAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGAGCTACTAGACAAGGCTGTGAATGCCCAGGTTGAAATCTATATATTGCAGAAGTTTGTTGAGGACTTGGAAGAGAAAAATCTTTCTTTGCTTATTGAATGTGAACAATATGAAGAGGCATCCAAGTTATCAGATAAACTTATTGCTGAATTGGAAGGTGAAAATCTTGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATCGATAAATTAAGAGCAGGAATCCGTAAGGTATTAATGGCACTTCAAATTGATCAAGATTGTGGGCAGGGAAATATGAAAGAAGAGAGAATTCTGATAGTGGATATTTTGGCCAGAATTGAGGATTTGAAAACTTCCGTGTTCAAAAACAAGGACAAGAAGCAGCAATTGCTAGTTCAGAACTCGGTTTTATTAACTCTTCTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTCTGTCAGAGAAAGAGAACATTGTGCAGGAGTTAAAGATCATGAAGGGCCAACTAGCAATGCATGAAAATGACAAGCATGAGCTTCTGAAGACGAAAAGCCAGTTGATGATGCAAGTTAGCCAGTGGGAGCAGCATGAGCTACTGCTGAAGGCAGAGATTGAAACTCTAAATGAGAAGCTAATAAATCTGCAAGGGGCCTGTCTCATGCTGGAAAAAGAAAATTGTAATGTTGCTGAAGAAAAGAAATCATTGCTGAAGAAATTTCTGGACCTTGAAGAGGACAAGAATATTATTCAACAAGAGCAGCAGAATTTAATCATCCAGGAAGTGATTGCTTTCAACATCCTATCCTCAATTTTTGAAAGCTTCAAAATAGAGAAGTTCTTGGAAATAGAAAATCTTGTTCAAGACATCTCTCATCTCCAAGTGGTTAATTCTGATACAAGGGAAGAAGTTGGAAAGTTGGCACAGAAATTTCAGTTGAAGGAAGTGGAAAATTTGCATTTAAATGGATCAGTACAGAAATTGGTCAAGGACCTACATGAAGCAGAAGACTTGAACGATGAACTTAACTATCAAATTTTACTTGGAAACGATTTTCTGAGGATGAAGGCCCAAGAGCTTTCTGAAACAGAAGAGGAACTTAAAAATTCACACAACTTCAACATGAAATTGTCTGGGGCAGTCGAGGAGCTGAAGATGGAAGGTAAAGAATCAACTATGATCAGACACAGACTACAGAATGAGAATCGTGAACTTTCTGAAAAGTGCTTAAGCCAGGAGAATGATATTCAATGCCTCTGTGAAGTAAATGAAAATTTAAAATCTGAAGTTGATTTGTTGAATGAGGAGGTCGAGAAATGCAAAATTAGAGAGGAGTGTCTGAGTTTAGAGCTACAGGAAAGAAGAGATGAATTTGAGCTCTGGGAGGCTGAAGCCACAACATTTTACTTTGATCTTCAAATCTCATCGATACGGGAGGTTTTATACGAACACAAGGTTCATGAACTTGCACAAGCTTGTGAAAATGCTGGGGATGAGAACGCTGCAAAAACTATGGAGATTGAACAACTCAGAGAAAGAGTAAGTTTCCTGGAAACTGAAATCAGAGAAATGGAGGCACAGTTGTCTGCATATAAGCCCGCCATAGCTTCTCTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGACTAGGGATACCTGTAGAGGTTTTATAGGAGAAGAGGGCGAGGAAACCACAATTCATGTTCATCACAGGAGCTGTAATGTCCACCACAGAGATGAGATATTGGATTTGCAGAAGATTGGGGCCATGATAAAAGCAGTTGAGAAGGCTGTGATCAAGGAAAAGGAGAAACTCAACAAAGAAGCTGCTGACAAACATGTCAAAGACTTCAAATCAGAAGGAGCCTCACGTCAGAAAGTGACAATGAAGGAAGGGAAAGATTTGAGGGATGAAATTACTGGCAATCAGAAGGCAAGAAAGAATAAACCGGACAATGGAATATTAATGAAGGATATTCCACTGGATCATGTATCAGATAGTTCTTTCCAGAGAAGAAGCAAAAGGGAAAGTAGTGAAACCAATGATCAAATGCTTAAGTTGTGGGAAACTGCTGAGCAGGATAGCGACCAGAATTTGATTGATAGCTCGCCACCACAAAGCCCGCCAGACCCACAAAAGCGGAAAACGCAGCGAAAGACGAAAGAAGGCATGTTCTTGTGGATGCACAAGACCTACTACTCATGGAGACTGAATCTTCTGATAGGTTTGGCAGAACAGTATAATCTTATAGAGGCAGCAGGCAATGGGCAGAGGTTGGCCGAAGGTGGACCGAAGTTGGCCTGCGGTGGTGAAGGTTGTGGCCTAAGTTTGGCGGCTGCTGTAATAGTTGGAGTTGACTGA 5448 40.64 MSFLYDWEEAAVSAILEVFGPLVRKKGLVSEVCLKNEIMLLTFSSLYFGDFLADPSSGQSSSPNLRKFYVVGDLDSVCFPHPLGQLTSDAVNRRSNRAILAWIRYLNNCWCKDQAFPRSKHFVWLLFAGVMATLMHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATAELRHAHKTMAQAFDNQMPPFMFSDESSVSEAESHTPEIHLPNHALHDKDDFHKELGSSSSTNQHPLRMEGDNAGESNSCSSKGGLKQLNEMFASRKNVPENLEVSEGSTVSQLVFHEGESDDQNLQNVEHPQLSRKINGLNSQVLCESESNEKLDAELQNLRKRLNQMEAEKEAFFLKYQNSLEKLSSLENELSSAQKDAGGLDERASKAEIEIKILKEALLDLKAEKNASLLQYNQCLQKISSLENQLSVAQQDAEGQNERAAKAEIEVQNLEQQLSRLAAEKEVSLLQYEQCLKKISALENKISLSEDYARMLDEQIKSSETEVEALNRALVELNKEKEIVSRQYEQCLEKIAKMETEISYAQADAQRLKGELVMANAKLETTEERCAHLEQSNHSLQFEADKLVQKIAMKDQELAEKQDELKKLQSLMNEEQSRFVQVENTLHTLQKLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEDLQRVKDENKILNELHFSSNTSMKNLEDQLSGLKEMKEKLEEVVSQKEEQSSLLEKEIHHLREEIKGLSGRYQGIMRQLEAVGLDPYSLESSVKEFQEENAKLREACENDRNKIEALYEKLSYMDELAKENSILKVSLAELNAELERLREKVKESQDLSQFTQGEKTTLVAEKSSLLSQLQNVTENMLKLLEKNTLLEDSLSSANKELEGLRAKSKGLEEFCQLLKDERSNLLNERGALVAQLENIELRLGNLEKRFTNLEEKCADLENDKDSALHQVEELRFSLLMEEQEHTSYKQLTEARLAGLENNVHNLREESRVSKEEIEELLDKAVNAQVEIYILQKFVEDLEEKNLSLLIECEQYEEASKLSDKLIAELEGENLEQQVEVEFMYNEIDKLRAGIRKVLMALQIDQDCGQGNMKEERILIVDILARIEDLKTSVFKNKDKKQQLLVQNSVLLTLLKQLSLESEELLSEKENIVQELKIMKGQLAMHENDKHELLKTKSQLMMQVSQWEQHELLLKAEIETLNEKLINLQGACLMLEKENCNVAEEKKSLLKKFLDLEEDKNIIQQEQQNLIIQEVIAFNILSSIFESFKIEKFLEIENLVQDISHLQVVNSDTREEVGKLAQKFQLKEVENLHLNGSVQKLVKDLHEAEDLNDELNYQILLGNDFLRMKAQELSETEEELKNSHNFNMKLSGAVEELKMEGKESTMIRHRLQNENRELSEKCLSQENDIQCLCEVNENLKSEVDLLNEEVEKCKIREECLSLELQERRDEFELWEAEATTFYFDLQISSIREVLYEHKVHELAQACENAGDENAAKTMEIEQLRERVSFLETEIREMEAQLSAYKPAIASLREDVESLKHIVLPQTRDTCRGFIGEEGEETTIHVHHRSCNVHHRDEILDLQKIGAMIKAVEKAVIKEKEKLNKEAADKHVKDFKSEGASRQKVTMKEGKDLRDEITGNQKARKNKPDNGILMKDIPLDHVSDSSFQRRSKRESSETNDQMLKLWETAEQDSDQNLIDSSPPQSPPDPQKRKTQRKTKEGMFLWMHKTYYSWRLNLLIGLAEQYNLIEAAGNGQRLAEGGPKLACGGEGCGLSLAAAVIVGVD 1815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5037599 5048444 - CaPI482276_05g005680.1 Cam05g0568 125972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0568 1815 Pfam KIP1-like protein 144 217 IPR011684 GO:0003779(InterPro)
Cam05g0568 1815 MobiDBLite consensus disorder prediction 1637 1710 - -
Cam05g0568 1815 Coils Coil 729 777 - -
Cam05g0568 1815 Coils Coil 533 665 - -
Cam05g0568 1815 MobiDBLite consensus disorder prediction 277 305 - -
Cam05g0568 1815 Coils Coil 799 826 - -
Cam05g0568 1815 Coils Coil 365 448 - -
Cam05g0568 1815 Coils Coil 886 920 - -
Cam05g0568 1815 Coils Coil 1350 1370 - -
Cam05g0568 1815 MobiDBLite consensus disorder prediction 1723 1749 - -
Cam05g0568 1815 Coils Coil 1051 1071 - -
Cam05g0568 1815 Coils Coil 1230 1250 - -
Cam05g0568 1815 Coils Coil 701 721 - -
Cam05g0568 1815 MobiDBLite consensus disorder prediction 270 305 - -
Cam05g0568 1815 MobiDBLite consensus disorder prediction 1693 1710 - -
Cam05g0568 1815 SUPERFAMILY Tropomyosin 352 577 - -
Cam05g0568 1815 Coils Coil 1420 1468 - -
Cam05g0568 1815 Coils Coil 1167 1201 - -
Cam05g0568 1815 Coils Coil 1375 1395 - -
Cam05g0568 1815 Coils Coil 830 871 - -
Cam05g0568 1815 MobiDBLite consensus disorder prediction 1637 1682 - -
Cam05g0568 1815 Coils Coil 1518 1552 - -
Cam05g0568 1815 Coils Coil 456 511 - -
Cam05g0568 1815 PANTHER PROTEIN NETWORKED 4A 480 1192 IPR051861 -
Cam05g0568 1815 Coils Coil 942 983 - -
Cam05g0568 1815 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 143 223 IPR011684 GO:0003779(InterPro)
Cam05g0568 1815 Coils Coil 1079 1099 - -
Cam05g0568 1815 Coils Coil 1002 1036 - -
Cam05g0568 1815 Coils Coil 1258 1278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0568 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0005 Cam-Chr3:1074203 Cam05g0568 Cam-Chr5:5037599 1.80E-32 dispersed
Cam05g0568 Cam-Chr5:5037599 Cam11g1481 Cam-Chr11:27551182 1.20E-28 dispersed
Cam10g0720 Cam-Chr10:12030328 Cam05g0568 Cam-Chr5:5037599 6.20E-32 transposed
Cam05g0568 Cam-Chr5:5037599 Cam07g0040 Cam-Chr7:1540040 1.00E-139 wgd
Cam05g0568 Cam-Chr5:5037599 Cam09g0711 Cam-Chr9:7085651 5.10E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44