Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0575 ATGTCTCCGTTTCGCCGCCAAAGCTGCTGGAGATGGGCCGCATCCCCACTCATCAAACCCCCCCTCCGAATTTCCCTGGCTAAACCCTCTCGCCTCCACCGAACACACACATATAATCTGTTCTTGATTAAGCCGGAGTTGTTCAAAATGGCATTACAATCACAAATTCGCATCATTTTTTCCTTGCGGAGCTCGATTCGTATCTCTTACTCAGCCAAACCTCTCTGCACCATTACTGGATCGACCCAGGTCTCCGAATCCCCCGACCTTCCGGACTGGGTAAAGTTCTTCGATACTAAAAGCTCTTCACATTCAGAATCTGAAGACGATGTCTTTGCTATTCCTCCATTGGTGCATTGGCTCGAATCTCAAAGGCTCCAAGACAACAGTAAAGTTATCAAGCACAAACTCGGCGAGACGAGCGATAACGAAGTGGACAAAATAAGCATGATGCTAAAGAATAGATACCCATCACCGGAAAACGTTGCAGAAGCTTTGAATGGTAAGGCTTACAGAGTTTCCAACACTTTGGTTGCACAGCTGCTGAAGAGATTTGGGAATGCTTGGATCCCAGCTTATGGGATTTTCAAGTGGGCGAAAGATCAAACACCTTATCGGCATTCACCTGAATCTTACAACTCCATGGTTGATATCTTGGGTAAGGCTAAAAAGTTTAGACTGATGTGGGAGTTAGTGGATGAGATGAATCATTTATCTGGGTATGTGAGTTTGGAGACGATGAGTAAGGTTATAAGGAGGCTTGCGAGGGCTGGTAGGTATCAGGAGGCAATTGAGGCATTCCGGAAGATAGAGAAATATGGGATTAGTACAGACACAGCAGCCATGAATGTGCTGATGGATGCATTAGTCAAGGAGGGCAGTGTTGAAGAAGCTCGCAATGTGTTTGAAGAATTCAAGGGTTCAATACCTTTCAATTTGACCTCTTTCAATGTTCTAATACATGGTTACTGCAAAGCTAGGAAGGTAAATGAGGCATGGAAGATTATGGAGGAACTGGAGAAAAATGGACTTGAACCTGATGTGATTTCCTACACTGCTTTCATTGAAGCTCATTGCCGCGACAAGGACTTCCGGAAGGTGGATAAGATTCTGATGCAAATGGAACAAAAGGGGTGCAGGCCTAATGCAGTAACTTTCACCATTATAATGCATGCTCTAGGGAAGGCAAAACAGATTAATGAAGCTCTAAAAGTATATGAGAAGATGAAGAAAGAGGGTTGTGTGCCTGATAGTCCATTCTATAGCTCCCTGATATTCATTCTTGGTAAAGCTGGTAGGCTCACAGATGTTCAGGAGATAGTAGAGGACATGACAAAGCAGGGGGTCAATCCAGATGTGTTGACATATAACACGATGATATCTTGTGCTTGTGCGCATTCACAAGAAGAGATAGCACTAAGATGGCTACGGAAAATGGAGGAGGTTTCGTGCAAGCCAGACCTCGAGACTTACCACCCTTTATTGAAGATGTTCTGTAAAAAGAAGAGAATGAAGGTGCTGCAGTTTTTGTTAGATCATATGTTCAAGAATGATGTAAGTATTGAAGCTGGGGCTTACTCGATTCTGGTGCGTGGGATGTGCAAGAACGGGAAACTCCATCTTGCTTGCTCATTCTTTGGGGAAATGGTGTCGAAGGGGATGGTTCCTAAAGATTCCACATTCACGATGTTGAAGGAAGAGCTTGAGAGGAAAAGTATGTTAGAAGAAGTGAAAATCATTGAGAAGTTGATGTCCTATGCAACAACTCAAGATACGAGTTAA 1782 43.83 MSPFRRQSCWRWAASPLIKPPLRISLAKPSRLHRTHTYNLFLIKPELFKMALQSQIRIIFSLRSSIRISYSAKPLCTITGSTQVSESPDLPDWVKFFDTKSSSHSESEDDVFAIPPLVHWLESQRLQDNSKVIKHKLGETSDNEVDKISMMLKNRYPSPENVAEALNGKAYRVSNTLVAQLLKRFGNAWIPAYGIFKWAKDQTPYRHSPESYNSMVDILGKAKKFRLMWELVDEMNHLSGYVSLETMSKVIRRLARAGRYQEAIEAFRKIEKYGISTDTAAMNVLMDALVKEGSVEEARNVFEEFKGSIPFNLTSFNVLIHGYCKARKVNEAWKIMEELEKNGLEPDVISYTAFIEAHCRDKDFRKVDKILMQMEQKGCRPNAVTFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSPFYSSLIFILGKAGRLTDVQEIVEDMTKQGVNPDVLTYNTMISCACAHSQEEIALRWLRKMEEVSCKPDLETYHPLLKMFCKKKRMKVLQFLLDHMFKNDVSIEAGAYSILVRGMCKNGKLHLACSFFGEMVSKGMVPKDSTFTMLKEELERKSMLEEVKIIEKLMSYATTQDTS 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5088219 5090000 + CaPI482276_05g005750.1 Cam05g0575 125979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0575 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Cam05g0575 593 SUPERFAMILY TPR-like 189 412 IPR011990 GO:0005515(InterPro)
Cam05g0575 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 308 IPR002885 -
Cam05g0575 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Cam05g0575 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Cam05g0575 593 Pfam PPR repeat 248 275 IPR002885 -
Cam05g0575 593 Pfam PPR repeat 282 306 IPR002885 -
Cam05g0575 593 Pfam PPR repeat 211 235 IPR002885 -
Cam05g0575 593 Pfam PPR repeat family 314 360 IPR002885 -
Cam05g0575 593 Gene3D Tetratricopeptide repeat domain 308 445 IPR011990 GO:0005515(InterPro)
Cam05g0575 593 Pfam Pentacotripeptide-repeat region of PRORP 402 566 IPR033443 -
Cam05g0575 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Cam05g0575 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Cam05g0575 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Cam05g0575 593 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 163 464 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Cam05g0575 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Cam05g0575 593 NCBIfam pentatricopeptide repeat 283 306 IPR002885 -
Cam05g0575 593 NCBIfam pentatricopeptide repeat 211 237 IPR002885 -
Cam05g0575 593 NCBIfam pentatricopeptide repeat 384 418 IPR002885 -
Cam05g0575 593 NCBIfam pentatricopeptide repeat 349 383 IPR002885 -
Cam05g0575 593 NCBIfam pentatricopeptide repeat 315 348 IPR002885 -
Cam05g0575 593 NCBIfam pentatricopeptide repeat 526 556 IPR002885 -
Cam05g0575 593 NCBIfam pentatricopeptide repeat 455 487 IPR002885 -
Cam05g0575 593 NCBIfam pentatricopeptide repeat 248 278 IPR002885 -
Cam05g0575 593 Gene3D Tetratricopeptide repeat domain 446 515 IPR011990 GO:0005515(InterPro)
Cam05g0575 593 Gene3D Tetratricopeptide repeat domain 516 588 IPR011990 GO:0005515(InterPro)
Cam05g0575 593 Gene3D Tetratricopeptide repeat domain 145 307 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0575 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0575 Cam-Chr5:5088219 Cam09g0311 Cam-Chr9:3510547 1.30E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014430 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 21