Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0619 ATGCTAATGCGACTTTTGGAAGCCCATGTTTCTTTTTCCTTCTATCATCATCTCTACTACGCGCAGTACACAGCCTCCATACATCTCCACCAGGCGGCTAGATTTATAGCACGTTTGATAATGGACTCTGTAGCCAAGAATTCAGAACGTAGGCCAATTTCTATTAAGTTGTGGCCTCCTAGTGAAAATACTCGGAAAATGCTTGTGGAGCGGATGACAAATAACCTTACCAGCAAATCCTTTTTCACCCAAAAATATGGTACTCTTAGTCAGGAAGAGGCTACAGATGAGTCAAAGAGAATTGAAGATATTGCTTTTGAGACGGCTAATCAGAATTATGGAAAACAGCCAGATGGTGATGGGGGTGCTGCTGTACAACTTTATGCCAAGGAATGCAGCAGGCTTCTTCTTGAGGTTCTTAAGAGAGGTCCTAAAGTTGAGGCAGACAAGGAGGCTGGATCTGATATCACTAGTGCTCCTCCTGAAATCTGTTTCGACATCTCAAAAGGTCGACGAACCTTTATTGAGGCAGAGGAAGCTGAAGAACTTCTAAAGCCTTTGAAAGAGCCGGGGAATTCTTATACCAAGATATGTTTCAGCAACCGAAGCTTTGGTTTAGAAGCAGCTCGTGTGACTGAGCCCATTCTTGTGTCCCTCAAGGATCAATTAAAAGAAGTGGATCTCTCTGATTTTATTGCAGGAAGACCAGAGTCAGAAGCTCTAGAGGTCATGAAATTGTTCTCTGATGCTTTAGAAGGCAGCATCTTGAGATCCTTGAACCTCTCAAACAATGCCTTAGGTGAGAAGGGTGTGAGAGCTTTTGGCTCTCTCCTGAAATCACAGTCTTGTTTAGAGGAGCTATATTTGATGAATGATGGAATTTCCAAGGAAGCTGCTCAGGCAGTATCTGAGTTGATTCCTTCAACAGATAAGCTTAAGATCCTTCATTTTCATAATAACATGACAGGCGATGAAGGTGCTTTTGCTATTGCCGAAGTCATAAAGCGTTCTCCTCTATTGGAAGATTTTCGTTGCTCCTCTACAAGAATAGACTCTGAGGGGGGCGTTGCCTTATCTTCAGCACTCGGGACTTGTACCAGATTGAAGAAACTTGACCTTCGAGACAACATGTTTGGAGTGGAAGGTGGAGTTGCTCTGAGTAAAGCCCTTTCACATCATGCGGATCTCAAGGAGCTGTATTTGAGTTACCTGAACTTGGAAGATGAAGGTGCAATTGCCATAGCCAATATACTGAAGGATACTGCTCCTGCGCTTGAAGTCTTGGAAATGGCTGGAAATGACATTACAGCTGAAGCTGCTTCTGCATTAGCTGCTTGCATAGCACAAAAGCCCCATCTGACCAGCTTGAGTTTGGCTGAGAATGAACTGAAAGATGAAGGAACCATCCAAATCAGTAAGGCATTAGAAAGTCCAAACAAAATAAAGGAAGTTGACATGAATACCAACTTAATTAGGAGAGCTGGTGCTCGGGTTTTAGCTCAAACTGTGGTTCAAAAGCCTGGTTTCCAACTGCTAAACATCAATGGAAATTTCATTTCTGATGAAGGCATTGATGAGTTGAAGGATATTTTCAAGAAATCTCCGAATATGCTCGGGCCCTTGGATGAAAACGATCCCGAAGGGGAAGATGGCAACGACGAGGAATCTGTAGCGGAGGATGAGGAGGAGGAGGATGAATTGGGATCAAAACTAAAGAACCTTGAAGTTAATCAAGAGAACTAG 1743 43.2 MLMRLLEAHVSFSFYHHLYYAQYTASIHLHQAARFIARLIMDSVAKNSERRPISIKLWPPSENTRKMLVERMTNNLTSKSFFTQKYGTLSQEEATDESKRIEDIAFETANQNYGKQPDGDGGAAVQLYAKECSRLLLEVLKRGPKVEADKEAGSDITSAPPEICFDISKGRRTFIEAEEAEELLKPLKEPGNSYTKICFSNRSFGLEAARVTEPILVSLKDQLKEVDLSDFIAGRPESEALEVMKLFSDALEGSILRSLNLSNNALGEKGVRAFGSLLKSQSCLEELYLMNDGISKEAAQAVSELIPSTDKLKILHFHNNMTGDEGAFAIAEVIKRSPLLEDFRCSSTRIDSEGGVALSSALGTCTRLKKLDLRDNMFGVEGGVALSKALSHHADLKELYLSYLNLEDEGAIAIANILKDTAPALEVLEMAGNDITAEAASALAACIAQKPHLTSLSLAENELKDEGTIQISKALESPNKIKEVDMNTNLIRRAGARVLAQTVVQKPGFQLLNINGNFISDEGIDELKDIFKKSPNMLGPLDENDPEGEDGNDEESVAEDEEEEDELGSKLKNLEVNQEN 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5376777 5382394 + CaPI482276_05g006190.1 Cam05g0619 126023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0619 580 Pfam WPP domain 54 149 IPR025265 -
Cam05g0619 580 SMART LRR_RI_2 309 336 - -
Cam05g0619 580 SMART LRR_RI_2 478 505 - -
Cam05g0619 580 SMART LRR_RI_2 281 308 - -
Cam05g0619 580 SMART LRR_RI_2 253 280 - -
Cam05g0619 580 SMART LRR_RI_2 393 420 - -
Cam05g0619 580 SMART LRR_RI_2 422 449 - -
Cam05g0619 580 SMART LRR_RI_2 450 477 - -
Cam05g0619 580 SMART LRR_RI_2 506 533 - -
Cam05g0619 580 SMART LRR_RI_2 365 392 - -
Cam05g0619 580 MobiDBLite consensus disorder prediction 534 580 - -
Cam05g0619 580 Coils Coil 557 577 - -
Cam05g0619 580 Gene3D Ribonuclease Inhibitor 167 448 IPR032675 -
Cam05g0619 580 SUPERFAMILY RNI-like 174 559 - -
Cam05g0619 580 MobiDBLite consensus disorder prediction 543 566 - -
Cam05g0619 580 Pfam Leucine Rich repeat 450 467 IPR001611 GO:0005515(InterPro)
Cam05g0619 580 Pfam Leucine Rich repeat 256 274 IPR001611 GO:0005515(InterPro)
Cam05g0619 580 Pfam Leucine Rich repeat 425 444 IPR001611 GO:0005515(InterPro)
Cam05g0619 580 Pfam Leucine Rich repeat 395 415 IPR001611 GO:0005515(InterPro)
Cam05g0619 580 Pfam Leucine Rich repeat 365 387 IPR001611 GO:0005515(InterPro)
Cam05g0619 580 Gene3D WPP domain 54 152 IPR038214 -
Cam05g0619 580 Gene3D Ribonuclease Inhibitor 449 566 IPR032675 -
Cam05g0619 580 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 46 579 IPR045203 GO:0005096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0619 K14319 - - csv:101208192 925.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0619 Cam-Chr5:5376777 Cam09g0734 Cam-Chr9:7413497 1.10E-121 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69