Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0624 ATGGTGGAAGTTAAATTAGGCTGCCCTACCTGCGATGAAGAAAAGAGTGGACCGTCGACCCGCATTGATCGCTCTCATGTCTTCTCAGGCCAGTCAGGTGGGTATTTATATGGTTACACGGCGTATTCAACTAGTAAGTTTGGGATTCGAGGTTTGGCAGAAGCCTTGCAACAGGAGGTCATTGGAGATGACATACATATTTCTCTTATATTTCCTCCAGACACTGACACTCCTGGATTTGCAGAAGAGCAAAAGAAATGGCTTGAATTGACCACTACCATTGCTGCTGGAGGAGGCAGTATGAAACCCGAGAACGTAGAAGATTTGGCTGGTTATTTCTCGGTAGTTTCTTTCATTGTATGGCTATTAGCTATTGAAATTCTCAACTCTGGATTTCACAATAACTGGAAGTAG 414 43.72 MVEVKLGCPTCDEEKSGPSTRIDRSHVFSGQSGGYLYGYTAYSTSKFGIRGLAEALQQEVIGDDIHISLIFPPDTDTPGFAEEQKKWLELTTTIAAGGGSMKPENVEDLAGYFSVVSFIVWLLAIEILNSGFHNNWK 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5435074 5436973 - CaPI482276_05g006240.1 Cam05g0624 126028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0624 137 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 29 57 IPR020904 GO:0016491(InterPro)
Cam05g0624 137 Pfam short chain dehydrogenase 29 84 IPR002347 -
Cam05g0624 137 Gene3D - 20 121 - -
Cam05g0624 137 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 112 IPR036291 -
Cam05g0624 137 PANTHER 3-KETODIHYDROSPHINGOSINE REDUCTASE 35 106 - GO:0005789(PANTHER)|GO:0006666(PANTHER)|GO:0030148(PANTHER)|GO:0047560(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0624 K04708 - - csv:101208848 131.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0624 Cam-Chr5:5435074 Cam05g1280 Cam-Chr5:12835639 7.60E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g447 . . . . . Bpe14g01315 . . . . Cma06g01427 . . . Sed02g1262 Cpe08g00247 . Bhi01g00846 Tan10g0875 Cmetu06g2026 . . . . . . . . . . . . . . . Lsi05g01445 . . Cme06g00632 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00568 Cam05g0624 Cec05g0634 Cco05g0629 Clacu05g0620 Cmu05g0588 Cre05g0656 . Csa03g01358 Chy06g00602 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004705 1 2 2 0 1 2 0 3 3 1 2 2 1 1 1 0 2 1 0 3 1 1 1 1 1 1 1 4 2 1 42