Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0633 ATGGCTCATATTGCTGTGGAAAGAAATAGGAGAAGGCAAATGAATGAACATCTTAGGGTTTTGAGATCTTTGACTCCTTGTTTCTATATCAAAAGGGGAGATCAAGCCTCGATTATTGGGGGAGTCATAGAGTTTATCAAGGAGTTGCATCAAGTTTTACAATCGTTGGAGTCCAACAAACGGAGGAGGAAGAGTATAAGCCCTAGCCCTGGTCCGAGCCCGAGGCTGCAATCAATGGCGGGATCCGATAATGGCTCGCTTGGATTTGAAAATGGAGTTGATGTCGTCGGAGCGTGTTGCAATTCATCGGTCGCAGATGTCGAAGCTAAGATTTCGGGTTCAAACGTGGTTTTGAAGATCATTTCCCGACGGATTCCTGGTCAACTTTCGAAGATGATTGGTGTCTTCGAGAGGCTCTCCTTTGAGGTTCTTCATCTCAACATTAGTAGTATGGATGACACAGTTCTGTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAACTAAGTTTGGAGGAACTAGCTTATGAAGTTCAACAAAGCTTCTGCTCTCAAGTGTATTTATGCCAATGA 573 43.63 MAHIAVERNRRRQMNEHLRVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSISPSPGPSPRLQSMAGSDNGSLGFENGVDVVGACCNSSVADVEAKISGSNVVLKIISRRIPGQLSKMIGVFERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAYEVQQSFCSQVYLCQ 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5498721 5500374 + CaPI482276_05g006330.1 Cam05g0633 126037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0633 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983(InterPro)
Cam05g0633 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 62 IPR036638 GO:0046983(InterPro)
Cam05g0633 190 SMART finulus 4 55 IPR011598 GO:0046983(InterPro)
Cam05g0633 190 CDD bHLH_AtFAMA_like 1 64 - -
Cam05g0633 190 Gene3D - 1 66 IPR036638 GO:0046983(InterPro)
Cam05g0633 190 MobiDBLite consensus disorder prediction 60 81 - -
Cam05g0633 190 PANTHER TRANSCRIPTION FACTOR FAMA 1 182 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cam05g0633 190 FunFam Transcription factor MUTE 1 67 - -
Cam05g0633 190 Pfam Helix-loop-helix DNA-binding domain 1 50 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0383 Cam-Chr5:3518326 Cam05g0633 Cam-Chr5:5498721 1.60E-39 dispersed
Cam05g0633 Cam-Chr5:5498721 Cam05g1038 Cam-Chr5:9387926 8.00E-40 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51878 PF00010 HLH 1.00E-07 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0633 - - - 0.0