Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0653 ATGGGTTGTGTTCTTGGAAAGTGTTGCACTTCCAGTCGTTACCAGCCGTCTTCCGACGGCGATATCACCCAATTTGGTGATGCCCCGCCGTGTAGTTTACGTGGAAAACATATACTAACCGGAAGGTCATTGGAGTCTGTTCGTGTGCCTTCTCACAACTACAATTTGGAGTATTCGCTTCTGACCCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGAAAACCAAGATAGTTTCTGTGTTAGTACACAAATTCGAGGTAACCCGAATATCCACATCTTTGGTGTTTTTGATGGTCATGGTCAATTTGGAATGCAGTGTTCGAATTTCGTTAAGGATAGGGTTGTGCAGCTATTGTGTAATGATTCAAAATTGTTGGAAGATCCTGTTAAAGCTTATAATTCGGCATTTTTGACTGCGAATGATGAATTGCATAATAGTGAGATTGATGATTCCATGAGCGGTACAACAGCTATTACTGTTCTTGTTCTTGGGAATACACTTTACGTTGCGAATGTGGGTGATTCGAGGGCGGTAGTGGCTGTTAAAAATGGGAATCGAATTGTGGCTGAGGACATGTCTCATGATCAAACACCATTTAGGAAGGATGAGTGTGAGAGAGTAAAGCTAGCTGGGGCTAGGGTTTTGACCATTGATCAAATTGAGGGGCTTAGAGATCCGGATATTCAAGTATGGGGTGATGAGGAGAGTGAGGGAAATGATCCTCCTCGATTGTGGTTTCCTAATAGTTTGTATCCTGGTACTGCATTTACGCGGAGTGTAGGAGACAGTGCAGCGGAGAAGATTGGTGTCACTGCTGTCCCTGAGGTTTCAGTTGTTCAACTGACTCAAAACCATCTTTTCTTTGTCGTTGCAAGCGATGGAGTTTTCGAGTTCCTTACAAGTCAAGCTGTTGTTGATATGGCTGCAAGGTATGCCGATCCGCGGGATGCATGCTCTGCTATTGCTGGAGAATCATATAAGCTATGGTTGGAGCATGAAAACCGGACAGATGATATAACAATCATCATCGTTCACATCAAAGGCCTCTCTAATTCAGGTGGTACTGGAACTGTTGGGCTGAATGGGGTCCGCATAAGGCATTCAAATTCAGAGCGGGGAACCTCCGAGATATCAGCTACCACTGGAAGTTCAGAGGCTTTTCGCTCCTTCAGAAGTGATTTATCAGATCTGCATATCTCTCAGCATGTGGGTTTGATGAACAGGAGTACGGCAATTGTCGTTCCATCTCCTGCGCAGCACCGACCGTTAGAAGTGGAAGTGGGCTAA 1290 45.12 MGCVLGKCCTSSRYQPSSDGDITQFGDAPPCSLRGKHILTGRSLESVRVPSHNYNLEYSLLTQRGYYPDSPDKENQDSFCVSTQIRGNPNIHIFGVFDGHGQFGMQCSNFVKDRVVQLLCNDSKLLEDPVKAYNSAFLTANDELHNSEIDDSMSGTTAITVLVLGNTLYVANVGDSRAVVAVKNGNRIVAEDMSHDQTPFRKDECERVKLAGARVLTIDQIEGLRDPDIQVWGDEESEGNDPPRLWFPNSLYPGTAFTRSVGDSAAEKIGVTAVPEVSVVQLTQNHLFFVVASDGVFEFLTSQAVVDMAARYADPRDACSAIAGESYKLWLEHENRTDDITIIIVHIKGLSNSGGTGTVGLNGVRIRHSNSERGTSEISATTGSSEAFRSFRSDLSDLHISQHVGLMNRSTAIVVPSPAQHRPLEVEVG 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5650384 5653912 + CaPI482276_05g006530.1 Cam05g0653 126057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0653 429 ProSiteProfiles PPM-type phosphatase domain profile. 57 347 IPR001932 -
Cam05g0653 429 SUPERFAMILY PP2C-like 45 349 IPR036457 -
Cam05g0653 429 Gene3D - 43 349 IPR036457 -
Cam05g0653 429 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169(InterPro)
Cam05g0653 429 Pfam Protein phosphatase 2C 79 322 IPR001932 -
Cam05g0653 429 SMART PP2C_4 49 345 IPR001932 -
Cam05g0653 429 PANTHER PROTEIN PHOSPHATASE 58 346 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam05g0653 429 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 52 349 - -
Cam05g0653 429 CDD PP2Cc 73 347 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0653 Cam-Chr5:5650384 Cam11g0973 Cam-Chr11:16193590 1.10E-23 dispersed
Cam05g2454 Cam-Chr5:32438797 Cam05g0653 Cam-Chr5:5650384 7.50E-10 transposed
Cam06g0966 Cam-Chr6:14675673 Cam05g0653 Cam-Chr5:5650384 2.20E-12 transposed
Cam05g0653 Cam-Chr5:5650384 Cam06g0567 Cam-Chr6:7742050 2.40E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0653 - - - 0.0