Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g0673 | ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCGTGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCGCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCAAGTCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAGCCATCGGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGGAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA | 1164 | 46.48 | MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPRAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5886305 | 5889144 | + | CaPI482276_05g006730.1 | Cam05g0673 | 126077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g0673 | 387 | CDD | F-box_AtTLP-like | 35 | 79 | - | - | |
Cam05g0673 | 387 | ProSitePatterns | Tub family signature 1. | 317 | 330 | IPR018066 | - | |
Cam05g0673 | 387 | PANTHER | TUBBY-RELATED | 25 | 386 | - | - | |
Cam05g0673 | 387 | Pfam | Tub family | 96 | 382 | IPR000007 | - | |
Cam05g0673 | 387 | FunFam | Tubby-like F-box protein | 92 | 387 | - | - | |
Cam05g0673 | 387 | ProSitePatterns | Tub family signature 2. | 372 | 387 | IPR018066 | - | |
Cam05g0673 | 387 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 387 | IPR025659 | - | |
Cam05g0673 | 387 | Gene3D | Tubby Protein; Chain A | 92 | 387 | IPR025659 | - | |
Cam05g0673 | 387 | PRINTS | Tubby superfamily signature | 344 | 363 | IPR000007 | - | |
Cam05g0673 | 387 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Cam05g0673 | 387 | PRINTS | Tubby superfamily signature | 317 | 333 | IPR000007 | - | |
Cam05g0673 | 387 | PRINTS | Tubby superfamily signature | 365 | 387 | IPR000007 | - | |
Cam05g0673 | 387 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Cam05g0673 | 387 | PRINTS | Tubby superfamily signature | 299 | 316 | IPR000007 | - | |
Cam05g0673 | 387 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - | |
Cam05g0673 | 387 | SUPERFAMILY | F-box domain | 28 | 78 | IPR036047 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0673 | Cam-Chr5:5886305 | Cam05g1157 | Cam-Chr5:10798164 | 1.40E-118 | dispersed | |
Cam07g1053 | Cam-Chr7:24878384 | Cam05g0673 | Cam-Chr5:5886305 | 1.50E-101 | transposed | |
Cam08g0782 | Cam-Chr8:8903032 | Cam05g0673 | Cam-Chr5:5886305 | 5.00E-122 | transposed | |
Cam08g1140 | Cam-Chr8:17745688 | Cam05g0673 | Cam-Chr5:5886305 | 1.00E-119 | transposed | |
Cam05g0673 | Cam-Chr5:5886305 | Cam06g0544 | Cam-Chr6:7510890 | 6.60E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51883 | PF01167 | Tub | 4.50E-110 | CL0395 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g0673 | K19600 | - | csv:101217713 | 771.155 |