Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0673 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCGTGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCGCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCAAGTCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAGCCATCGGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGGAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 46.48 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPRAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5886305 5889144 + CaPI482276_05g006730.1 Cam05g0673 126077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0673 387 CDD F-box_AtTLP-like 35 79 - -
Cam05g0673 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cam05g0673 387 PANTHER TUBBY-RELATED 25 386 - -
Cam05g0673 387 Pfam Tub family 96 382 IPR000007 -
Cam05g0673 387 FunFam Tubby-like F-box protein 92 387 - -
Cam05g0673 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cam05g0673 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cam05g0673 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Cam05g0673 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cam05g0673 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cam05g0673 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cam05g0673 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cam05g0673 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cam05g0673 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cam05g0673 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cam05g0673 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0673 Cam-Chr5:5886305 Cam05g1157 Cam-Chr5:10798164 1.40E-118 dispersed
Cam07g1053 Cam-Chr7:24878384 Cam05g0673 Cam-Chr5:5886305 1.50E-101 transposed
Cam08g0782 Cam-Chr8:8903032 Cam05g0673 Cam-Chr5:5886305 5.00E-122 transposed
Cam08g1140 Cam-Chr8:17745688 Cam05g0673 Cam-Chr5:5886305 1.00E-119 transposed
Cam05g0673 Cam-Chr5:5886305 Cam06g0544 Cam-Chr6:7510890 6.60E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51883 PF01167 Tub 4.50E-110 CL0395 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0673 K19600 - csv:101217713 771.155