Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0692 ATGAAGCCGTACGGTCACTCTATTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACACCCCATGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGTACCATCACCTGTTCAGGTTACACCAATGCCACCTCCAGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTTCGGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCGAGGCCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCCGTGCAGAGGGTCGGCACAAGCTTTCAATTCGAATTGAATATGAATTTGAAGCTGTGTTATTCCCACTCGTTTTTTTCCCTCATTTATTGTGGAAAAAGATGTATTTAAGACTCTGGGAGTCATCCCAATGGCAATGTGATCTTGAGAGCAATGATGATGCTTTGCTTACCCAGCAATACTTGAGTCTTTTTGTAAAGCAGGTTCCTGATTTAGTTTGTCTTGAAGAGGGAATCTTTTCAGATTCAGATATCCACTTCCTTTTCCCCTTTCTGAAGGTTACTGTTGGTTTCTAG 1716 47.79 MKPYGHSIEGSHSDPSPEWTASGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPVPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTRAEGRHKLSIRIEYEFEAVLFPLVFFPHLLWKKMYLRLWESSQWQCDLESNDDALLTQQYLSLFVKQVPDLVCLEEGIFSDSDIHFLFPFLKVTVGF 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6050852 6055552 - CaPI482276_05g006920.1 Cam05g0692 126096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0692 571 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872(InterPro)
Cam05g0692 571 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872(InterPro)
Cam05g0692 571 MobiDBLite consensus disorder prediction 1 44 - -
Cam05g0692 571 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 SMART c3hfinal6 302 329 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 MobiDBLite consensus disorder prediction 278 305 - -
Cam05g0692 571 MobiDBLite consensus disorder prediction 278 299 - -
Cam05g0692 571 Gene3D - 37 89 - -
Cam05g0692 571 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 118 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 329 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872(InterPro)
Cam05g0692 571 PANTHER PROTEIN PHOSPHATASE RELATED 38 376 IPR050974 GO:0003729(PANTHER)
Cam05g0692 571 MobiDBLite consensus disorder prediction 403 476 - -
Cam05g0692 571 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 SUPERFAMILY CCCH zinc finger 306 329 IPR036855 GO:0046872(InterPro)
Cam05g0692 571 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Cam05g0692 571 Gene3D - 90 170 - -
Cam05g0692 571 Gene3D - 300 385 - -
Cam05g0692 571 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872(InterPro)
Cam05g0692 571 MobiDBLite consensus disorder prediction 424 476 - -
Cam05g0692 571 FunFam CCCH type zinc finger protein 300 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1082 Cam-Chr3:20172643 Cam05g0692 Cam-Chr5:6050852 7.80E-22 dispersed
Cam04g0130 Cam-Chr4:3877950 Cam05g0692 Cam-Chr5:6050852 1.10E-19 dispersed
Cam05g0692 Cam-Chr5:6050852 Cam09g2326 Cam-Chr9:37733580 3.20E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51886 PF00642 zf-CCCH 1.60E-07 CL0537 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0692 - - - 0.0