Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0706 ATGCATAATACTTCTTCTTCAATTCATCCCCATTTCCTTCAATTCCCTCCTCACCACCGCCTCTGTCATATAGTATGCTTCAAGAAGCTTCAACAAAACCTGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGCCTGGACTTCCAAGGATCAGCAGTTTCTCTTGCTTATCTGGTGCTGCATTGAGTGCTAATGCTACCCTAGCGAACACAAATCTATGCAATGGGTTGATAGGAGAAGAAATTCTGCCGACCTGGGACTCTCCTAACTCCTTCCGTAAGGTTCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTTTCAAACTTAAGTTGCAGTCCATCTACCCCAACGTCTGAATATGATTCATACTTGTTGAAATCCATGAGTGCTCCATCCGGAAGTGAAGGTTTCCTTAATGTTAAGGAAGTGCAAGTGGCAGGTGGAGCTGCCGGTGAGGACAGGGTTCAAGCTGTTTGTTCTGAAGAAAATGGATGGCTATTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACATTGTACGAAACCATTGTATTTCATTTTAACCTACTAGATTGGGAAGCTAAGAATGAAACCTCCGACCGTATGGATATGGATAATTCACATCTTCTTGATGATAGTAGCATTACTCAAGGAAGATTTTCTCCATTCGGAAACAATAGTAAAATTGCTTCAGATATCCCCAATTTATTAGAGAACCATTCATATTCCAAAGCAGGAATGACAAACTGTTCTCTAAGGCATGGGGTGTTCGATAGCCTCCAGCGTGCGCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAAGATCGTCCTGATTTAGTTTCTGTTGGGTCATGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTGTACACGCTAAATTTGGGTGATAGTAGAGCAGTACTAGCTACCCTTGATGAGGGTGCTATGAGAGGGAATGGGGGACTGAAAGCTGTCCAGCTCACTGAGAGTCACACTGTGGATAATGAACTTGAAAGAGCACAGTTACAACATGATCATCCTGATGATCCGGCAATCATAGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCATTTGGAGTTGGCTACTTGAAGACGAAAAAATTTAATGATGCTTTGATGGGTATTCTTCGAGTCCGTAACCTAATAAGCCCTCCCTATATTTCCACTCAACCGGCATTGTCTATCCATAGGATATCAAAATCAGATTGCTTTGTTATAGTTGGAAGTGATGGTTTATTTGACTTTTTTGGCAATGAGGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGCGATCCTGCAAAATTTTTACTGGAGCAGCTCCTATTGAAAGCAGCTGATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCCGGCAGGAGAAGGAAATATCATGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATTCAACCTCTAAGATAA 1605 41.62 MHNTSSSIHPHFLQFPPHHRLCHIVCFKKLQQNLRENLKLALVINAMPGLPRISSFSCLSGAALSANATLANTNLCNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSYLLKSMSAPSGSEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFHFNLLDWEAKNETSDRMDMDNSHLLDDSSITQGRFSPFGNNSKIASDIPNLLENHSYSKAGMTNCSLRHGVFDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNGGLKAVQLTESHTVDNELERAQLQHDHPDDPAIIVGGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSIHRISKSDCFVIVGSDGLFDFFGNEEAVNLVHSYILSNPTGDPAKFLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSIQPLR 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6202528 6207434 - CaPI482276_05g007060.1 Cam05g0706 126110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0706 534 ProSiteProfiles PPM-type phosphatase domain profile. 148 517 IPR001932 -
Cam05g0706 534 Gene3D - 128 526 IPR036457 -
Cam05g0706 534 Pfam Protein phosphatase 2C 280 468 IPR001932 -
Cam05g0706 534 SUPERFAMILY PP2C-like 162 518 IPR036457 -
Cam05g0706 534 CDD PP2Cc 161 517 IPR001932 -
Cam05g0706 534 SMART PP2C_4 139 515 IPR001932 -
Cam05g0706 534 PANTHER PROTEIN PHOSPHATASE 2C 157 515 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2088 Cam-Chr2:33749551 Cam05g0706 Cam-Chr5:6202528 1.90E-62 dispersed
Cam05g0706 Cam-Chr5:6202528 Cam10g0180 Cam-Chr10:3391304 4.40E-59 dispersed
Cam05g0706 Cam-Chr5:6202528 Cam04g0908 Cam-Chr4:23194056 1.50E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0706 - - - 0.0