Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0719 ATGGTGATTGGCGTCGATGAAAGTGAGCACAGCTTCTACGCCTTGAATTGGACGCTTCAACATTTCTTTGGCCCTGACGCTACTCCTTACAAGCTCGTTATTGTCAACGCCAAACCACCTCCCTCTAGCTTACTTGGAATTGCCGGCCCAGCAGCCGTGGATGTCTTGCCCCTGCTCGATGCAGATTTGAAGAAAATAGCTAATAGGACTGTACAAAAGGCGAAGGATATATGCATCGAACACAAGGTTCAAAGCGTGCAGACTGAAGTTGTGGAGGGTGATGCCAGAAATGTAATGTGCGATTCCGTTGAAAAATTTCATGCATCCATTTTGGTTGTTGGAAGTCACAATTATGGAGTAGTAAAAAGGATGGGACTTGGCAGTGTAAGTGACTTCTGTGCTCACCATGCCCATTGCTCTGTCATGATTGTGAAGAGGCCTCCCAAACCCATGACCTAA 459 46.62 MVIGVDESEHSFYALNWTLQHFFGPDATPYKLVIVNAKPPPSSLLGIAGPAAVDVLPLLDADLKKIANRTVQKAKDICIEHKVQSVQTEVVEGDARNVMCDSVEKFHASILVVGSHNYGVVKRMGLGSVSDFCAHHAHCSVMIVKRPPKPMT 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6272008 6273796 + CaPI482276_05g007190.1 Cam05g0719 126123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0719 152 Gene3D HUPs 1 152 IPR014729 -
Cam05g0719 152 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 149 - -
Cam05g0719 152 PRINTS Universal stress protein signature 105 117 IPR006015 -
Cam05g0719 152 PRINTS Universal stress protein signature 123 145 IPR006015 -
Cam05g0719 152 Pfam Universal stress protein family 2 145 IPR006016 -
Cam05g0719 152 CDD USP_Like 1 144 - -
Cam05g0719 152 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 2 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0719 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0719 Cam-Chr5:6272008 Cam09g0581 Cam-Chr9:5778950 4.30E-52 dispersed
Cam02g1566 Cam-Chr2:28576937 Cam05g0719 Cam-Chr5:6272008 1.70E-25 transposed
Cam05g2461 Cam-Chr5:32494211 Cam05g0719 Cam-Chr5:6272008 1.10E-13 transposed
Cam08g1633 Cam-Chr8:22556413 Cam05g0719 Cam-Chr5:6272008 7.40E-24 transposed
Cam09g1958 Cam-Chr9:34260410 Cam05g0719 Cam-Chr5:6272008 3.00E-09 transposed
Cam10g1115 Cam-Chr10:24202285 Cam05g0719 Cam-Chr5:6272008 2.70E-23 transposed
Cam05g0719 Cam-Chr5:6272008 Cam09g0580 Cam-Chr9:5762040 2.40E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g294 . . . . . Bpe14g01127 . . . . Cma06g01503 . Car06g01294 . . Cpe08g00181 . Bhi01g01022 Tan10g1014 Cmetu06g1461 . Hepe05g1442 . . . . . . . . . . . . . . . . Cme06g00737 Blo02g00504 . . . . . . Bma06g01498 . Cmo06g01501 . . . . . . . . . . . . . . Cla05g00657 Cam05g0719 Cec05g0729 Cco05g0728 Clacu05g0713 Cmu05g0678 Cre05g0752 . Csa03g01472 Chy06g00709 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000594 1 7 3 4 3 2 4 2 2 4 3 2 5 5 4 5 2 4 4 2 4 4 4 3 3 4 4 2 5 3 104