Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0734 ATGTCTGATGATGGAGGGAAGAACAAGAAAGCTGCTCTCATCGGCGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCTGTGGCAGTCGGTGTCAATCGCAAAGACTCCGACATTGCTGGTGGCCGCGGTGCCACGGCGGAGATCTCCACCTCCACCAAAGCCATTAAGGCTCTCTGTCAGCCCACCGATTACCAAGAAACCTGCGAGACAGCTCTGTCCCAAGCCGGGACCAACACAAGCGACCCACGTGAGCTAATCAAAGCCGGATTCCATGTCGCCGTCGACCAAATCAAATGGGCCATCGGAAATTCCTCCACCTTGAAAGATTCCGCCAGTGATCCCATGGCTAAACAAGCTCTTGACGCTTGTGGCGAGCTAATGGATTACGCAATTGACGATCTCTTAATTTCCTTTGAAAGAATCACAGACAATTTTGATATCCAGAAAATTGATGATTACATAGAGGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCTTGGATGGATTCGAAAATGTCACCGGAGATACAGGGGAAAAGATGAAGAATTTGTTGAAAATGTCAAAAGAATTGACAGCTAATGGGCTTGGAATGGTTAGTGAAGTTACTTCCATTATGACCTCTTTTGGGCTTCCATCGGCTGGACGACGGCTGTTGGAGGAATCCGATGAACAAGAGAAAGAGCCGTCGTGGGTTAGTGACAGACGTGGGCTACTTCAAGCCACCGGCGCCACCATCAAGGCGGATGTTGTGGTGGCGAAAGATGGAAGTGGAAAGTACAAAACGGTGAGTGAAGCCTTAAATGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTTATGTTAAGGCCGGAGTTTATCAAGAACAAGTAATGGTAGAAAAAAGTATGACTTGGGTAATGATGATCGGAGATGGGCCGACTAAAACCAAGATCACCGCCGGCAAGAACTTCATTGACGGAACACCCACCTTCAAAACCGCTACTGTTGCGGTGATTGGAACCAACTTCATCGCGAAGGACATGGGGTTCGAGAACTCTGCCGGACCAGAGAAGCACCAAGCAGTGGCACTCCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACTCACGCTCACCGTCAATTCTACCGAGACTGCACCATTACCGGCACCATCGATTTCATCTTCGGCAACGGCGCCGTCGTCTTCCAGAACTGCAAGATCCTCGTGAGGAAGCCAATGGAGAATCAACAATGCATCGTCACCGCACAAGGTCGAACTCAACGAAAGGAGCCCACCGCCATAATCTTGCAGAATTGTGTCATCTCCTCTGACCCTGACTTCTTCCCCGTCCGCCACATCCACAAAACCTACCTCGGTCGTCCGTGGAAGCAATATTCAAGAACCATCATCATGCAGTCCCAAATTGATGATTTGATCCAACCTGAAGGGTGGCTCCCATGGATGGGCGATTTTGCTCTCAACACTCTGTTTTACACAGAGTACAATAACAGAGGACCTGGCGCCGCAAAGGATAAGCGAGTTAAGTGGAGGGGAATTAAGCAGATCACGCCGGAGCACGCCTTCGATTTCACCGCTGGGAGATTTATTCGCGGTGATCCATGGATCAAGCCCACTGGAGTTCCGTACACTTCCGGCATGATGGCAGTATAA 1707 48.74 MSDDGGKNKKAALIGVSSLFLVAMVVAVAVGVNRKDSDIAGGRGATAEISTSTKAIKALCQPTDYQETCETALSQAGTNTSDPRELIKAGFHVAVDQIKWAIGNSSTLKDSASDPMAKQALDACGELMDYAIDDLLISFERITDNFDIQKIDDYIEDLKVWLSGALTYQETCLDGFENVTGDTGEKMKNLLKMSKELTANGLGMVSEVTSIMTSFGLPSAGRRLLEESDEQEKEPSWVSDRRGLLQATGATIKADVVVAKDGSGKYKTVSEALNDVPKKSNKTFVIYVKAGVYQEQVMVEKSMTWVMMIGDGPTKTKITAGKNFIDGTPTFKTATVAVIGTNFIAKDMGFENSAGPEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMENQQCIVTAQGRTQRKEPTAIILQNCVISSDPDFFPVRHIHKTYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWMGDFALNTLFYTEYNNRGPGAAKDKRVKWRGIKQITPEHAFDFTAGRFIRGDPWIKPTGVPYTSGMMAV 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6389342 6391137 - CaPI482276_05g007340.1 Cam05g0734 126138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0734 568 Gene3D - 249 565 IPR012334 -
Cam05g0734 568 NCBIfam pectinesterase inhibitor domain 51 203 IPR006501 GO:0004857(InterPro)
Cam05g0734 568 CDD PMEI-like_3 58 210 - -
Cam05g0734 568 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Cam05g0734 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 208 IPR035513 -
Cam05g0734 568 FunFam Pectinesterase 52 209 - -
Cam05g0734 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 208 IPR035513 -
Cam05g0734 568 Pfam Plant invertase/pectin methylesterase inhibitor 54 202 IPR006501 GO:0004857(InterPro)
Cam05g0734 568 FunFam Pectinesterase 249 565 - -
Cam05g0734 568 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Cam05g0734 568 SUPERFAMILY Pectin lyase-like 250 564 IPR011050 -
Cam05g0734 568 Pfam Pectinesterase 255 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam05g0734 568 PANTHER PECTINESTERASE 10 556 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam05g0734 568 SMART PMEI_2 51 204 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0823 Cam-Chr3:9670339 Cam05g0734 Cam-Chr5:6389342 1.20E-118 dispersed
Cam03g1734 Cam-Chr3:32426683 Cam05g0734 Cam-Chr5:6389342 1.30E-197 dispersed
Cam04g1278 Cam-Chr4:26641294 Cam05g0734 Cam-Chr5:6389342 4.90E-10 dispersed
Cam05g0734 Cam-Chr5:6389342 Cam11g0016 Cam-Chr11:1730878 1.40E-135 dispersed
Cam05g0734 Cam-Chr5:6389342 Cam06g0495 Cam-Chr6:7060431 5.80E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0734 K01051 - csv:101212686 1004.97