Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0746 ATGTCTACAGCCAGTTCGAGTTCTGTAAGGAAAGCTGGTGAAGCTGTTCCCGACCAGTTTCCGGCCGGCCTTCGTGTTCTGGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGAAGTAACAAATTGTAGTCGAGCCGAGGATGCACTGTCTCTTCTCAGACAGTACAAAAACGGGTTCGATATCGTTTTGAGTGACGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGCGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCACGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGATGTGTTGACGATGCAGATCGGCAGCAAAAAACTAATGAAGATGCAGATTATTCATCATCTGCTAATGAAGGGAGTTGGAGGAATTCAAAGAGAAGGAAGGATGACGTTGAAGATCCTGAGGAGAGGGACGATTCGTCGACCCTAAAGAAACCAAGGGTCGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTACCTGAGAAGACTAAGTGGAATCACGCAACACCAGAGTAATTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGTCCCGTCGATGAATGGCCTTGATCTTCAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCCGGCATGCCTATGCCTCTTGTCGATCAGAGGAACCACATTTTTAGCTTTGAAAATCCGAAGTTGAGATTCGGTGATGGGCAACAGCCACACTTGAATGGTAATAAGCCAATGAACCTACTTCATGGAATTCCAACAACTATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAAGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTCGAGCGCAGATCCTTAACGAAAGCACCTCAACTAGCGTAACAAGGCTTCCACCAACAATGCAGCAGTCAATTTTGCCGAATGGAACTACTGGTGCGGTTTTGGCTAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCTTGAATCAAACTGCAGAATTGCCTGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGTATTGTACCAAAGGGAAGATTTCCAGACGAGGTTAACTCCGACATTAAAGGATCTGAAGGTTTTGTGTCAAGCTATGATATGTTTAGGGATCTCCATCCTCAGAAACCCCATGATTGGGACTTGCAACACGTAGGGCTGACCTTCGATACATCTCAAGGTAGTCTCGACATTCCACCTTCTGCTTTTGCTCACCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAATAGGAATGCATCTACCGCAGGCAAGGCCATGTTCTTATTGGAAGAAGGAAGTGACAATGGTAATGCACAAAGTGTGGGCCATCAACTCAACCCTCTTTTCGTCGATGGTTCGGTGAGAGTTAAAGCTGAAAGAGCTCCTGATACTAGCAATCAAACAGACCTTTTCTCTGACCATTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAAGGAAGCATTGCAACAGCTGAAAGTGAATTGGAATGGGTGTTTCATCATAATACTCCTGTTTAG 1986 44.86 MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTNCSRAEDALSLLRQYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDADRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDPEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFVPSMNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGNKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGSQSSSQLMQTPQPQARAQILNESTSTSVTRLPPTMQQSILPNGTTGAVLARNEFANNSRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSDIKGSEGFVSSYDMFRDLHPQKPHDWDLQHVGLTFDTSQGSLDIPPSAFAHQGYASSQQNGQNRNASTAGKAMFLLEEGSDNGNAQSVGHQLNPLFVDGSVRVKAERAPDTSNQTDLFSDHFGQEDLMSALLKQQQGSIATAESELEWVFHHNTPV 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6486038 6489195 + CaPI482276_05g007460.1 Cam05g0746 126150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0746 661 PIRSF RR_ARR_type-B 5 651 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cam05g0746 661 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cam05g0746 661 CDD REC_typeB_ARR-like 26 140 - -
Cam05g0746 661 Gene3D - 201 263 - -
Cam05g0746 661 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Cam05g0746 661 FunFam Two-component response regulator 200 263 - -
Cam05g0746 661 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cam05g0746 661 SUPERFAMILY CheY-like 23 147 IPR011006 -
Cam05g0746 661 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677(InterPro)
Cam05g0746 661 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 346 IPR045279 GO:0009736(InterPro)
Cam05g0746 661 Gene3D - 24 158 - -
Cam05g0746 661 MobiDBLite consensus disorder prediction 154 202 - -
Cam05g0746 661 FunFam Two-component response regulator 24 161 - -
Cam05g0746 661 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Cam05g0746 661 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Cam05g0746 661 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Cam05g0746 661 MobiDBLite consensus disorder prediction 180 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0746 Cam-Chr5:6486038 Cam05g1810 Cam-Chr5:26970754 6.10E-87 dispersed
Cam05g0746 Cam-Chr5:6486038 Cam06g0476 Cam-Chr6:6887947 1.60E-215 wgd
Cam05g0746 Cam-Chr5:6486038 Cam09g0542 Cam-Chr9:5449780 1.30E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51891 PF00072 Response_reg 1.50E-22 CL0304 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0746 K14491 - csv:101209013 1245.72