Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g0746 | ATGTCTACAGCCAGTTCGAGTTCTGTAAGGAAAGCTGGTGAAGCTGTTCCCGACCAGTTTCCGGCCGGCCTTCGTGTTCTGGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGAAGTAACAAATTGTAGTCGAGCCGAGGATGCACTGTCTCTTCTCAGACAGTACAAAAACGGGTTCGATATCGTTTTGAGTGACGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGCGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCACGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGATGTGTTGACGATGCAGATCGGCAGCAAAAAACTAATGAAGATGCAGATTATTCATCATCTGCTAATGAAGGGAGTTGGAGGAATTCAAAGAGAAGGAAGGATGACGTTGAAGATCCTGAGGAGAGGGACGATTCGTCGACCCTAAAGAAACCAAGGGTCGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTACCTGAGAAGACTAAGTGGAATCACGCAACACCAGAGTAATTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGTCCCGTCGATGAATGGCCTTGATCTTCAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCCGGCATGCCTATGCCTCTTGTCGATCAGAGGAACCACATTTTTAGCTTTGAAAATCCGAAGTTGAGATTCGGTGATGGGCAACAGCCACACTTGAATGGTAATAAGCCAATGAACCTACTTCATGGAATTCCAACAACTATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAAGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTCGAGCGCAGATCCTTAACGAAAGCACCTCAACTAGCGTAACAAGGCTTCCACCAACAATGCAGCAGTCAATTTTGCCGAATGGAACTACTGGTGCGGTTTTGGCTAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCTTGAATCAAACTGCAGAATTGCCTGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGTATTGTACCAAAGGGAAGATTTCCAGACGAGGTTAACTCCGACATTAAAGGATCTGAAGGTTTTGTGTCAAGCTATGATATGTTTAGGGATCTCCATCCTCAGAAACCCCATGATTGGGACTTGCAACACGTAGGGCTGACCTTCGATACATCTCAAGGTAGTCTCGACATTCCACCTTCTGCTTTTGCTCACCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAATAGGAATGCATCTACCGCAGGCAAGGCCATGTTCTTATTGGAAGAAGGAAGTGACAATGGTAATGCACAAAGTGTGGGCCATCAACTCAACCCTCTTTTCGTCGATGGTTCGGTGAGAGTTAAAGCTGAAAGAGCTCCTGATACTAGCAATCAAACAGACCTTTTCTCTGACCATTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAAGGAAGCATTGCAACAGCTGAAAGTGAATTGGAATGGGTGTTTCATCATAATACTCCTGTTTAG | 1986 | 44.86 | MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTNCSRAEDALSLLRQYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDADRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDPEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFVPSMNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGNKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGSQSSSQLMQTPQPQARAQILNESTSTSVTRLPPTMQQSILPNGTTGAVLARNEFANNSRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSDIKGSEGFVSSYDMFRDLHPQKPHDWDLQHVGLTFDTSQGSLDIPPSAFAHQGYASSQQNGQNRNASTAGKAMFLLEEGSDNGNAQSVGHQLNPLFVDGSVRVKAERAPDTSNQTDLFSDHFGQEDLMSALLKQQQGSIATAESELEWVFHHNTPV | 661 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6486038 | 6489195 | + | CaPI482276_05g007460.1 | Cam05g0746 | 126150 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g0746 | 661 | PIRSF | RR_ARR_type-B | 5 | 651 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Cam05g0746 | 661 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160(InterPro) | |
Cam05g0746 | 661 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Cam05g0746 | 661 | Gene3D | - | 201 | 263 | - | - | |
Cam05g0746 | 661 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160(InterPro) | |
Cam05g0746 | 661 | FunFam | Two-component response regulator | 200 | 263 | - | - | |
Cam05g0746 | 661 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160(InterPro) | |
Cam05g0746 | 661 | SUPERFAMILY | CheY-like | 23 | 147 | IPR011006 | - | |
Cam05g0746 | 661 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 204 | 257 | IPR006447 | GO:0003677(InterPro) | |
Cam05g0746 | 661 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 19 | 346 | IPR045279 | GO:0009736(InterPro) | |
Cam05g0746 | 661 | Gene3D | - | 24 | 158 | - | - | |
Cam05g0746 | 661 | MobiDBLite | consensus disorder prediction | 154 | 202 | - | - | |
Cam05g0746 | 661 | FunFam | Two-component response regulator | 24 | 161 | - | - | |
Cam05g0746 | 661 | Pfam | Myb-like DNA-binding domain | 206 | 256 | IPR001005 | - | |
Cam05g0746 | 661 | SUPERFAMILY | Homeodomain-like | 201 | 261 | IPR009057 | - | |
Cam05g0746 | 661 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 203 | 260 | IPR017930 | - | |
Cam05g0746 | 661 | MobiDBLite | consensus disorder prediction | 180 | 202 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g0746 | Cam-Chr5:6486038 | Cam05g1810 | Cam-Chr5:26970754 | 6.10E-87 | dispersed | |
Cam05g0746 | Cam-Chr5:6486038 | Cam06g0476 | Cam-Chr6:6887947 | 1.60E-215 | wgd | |
Cam05g0746 | Cam-Chr5:6486038 | Cam09g0542 | Cam-Chr9:5449780 | 1.30E-12 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51891 | PF00072 | Response_reg | 1.50E-22 | CL0304 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g0746 | K14491 | - | csv:101209013 | 1245.72 |