Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0841 ATGGAGGACGATTTCGAGTTCCCGTCTGCAAGCAATGTAGACGAGGAAATGGGCTTGCCTGAGGACGAAGCGGAGAGCTCAGTTCTGAAGGTTGGCGAAGAGAAGGAGATTGGAAAGAATGGGCTGAAGAAGAAACTTGTTAAAGAAGGCGAAGGATGGGAAACTCCCGAGACTGGTGATGAAGTCGAAGTGCATTATACGGGAACCCTTCTTGATGGAACTCAATTCGATTCGAGCCGTGACCGAGGAACGCCCTTCAAGTTCAAGCTCGGGGAAGGGCAAGTGATTAAAGGATGGGATGAAGGTATTAGAACAATGAAAAAGGGTGAAAGTGCAGTTTTCACGATACCTCCTGAATTGGCCTATGGAGAGTCCGGCTCTCCTCCAACAATTCCACCGAATGCTACTCTTCAATTTGATGTTGAGCTACTTTCATGGCACAGCGTCAAAGACATCTGCCAAGATGGAGGAATCTTGAAAAAGATCCTTGTTAAAGGAGACGGCTGGGACAAACCGAAGGATTTGGACGAAGTCTCGGTTCTTTATGAGGCTCGTCTTGAAGATGGTACACTGATCTCAAAGTCCGATGGGGCCGAATTCACTGTTGAAAAAGGGTACTTCTGTCCTGCCTTGGCAACGTCCGTGAAGACCATGAAGAAGGGAGAGAAAGCTTTGTTGACTGTGAGGCCACAATATGCATTTGGGGAGTCTGGTAGGCCTGGAGCTGGAGAAGAAGGTGCTGTGCCTCCAAATGCCACACTTCAGATAACCCTTCAATTGGTTTCTTGGAAAACTGTTACAGAGGTTACTAAGGATAAGAAGGTCCTGAAGAAGACCCAGAAGGAGGGAGAAGGATATGAACAGCCAAATGAGGGAGCAGTGGTGCAAGTGAAACTAACCGGTAAACTGGCCGATGGGATGATTTTTACGAAAAAGGGTGATGATGAGAAGCCATTTGAGTTCAAAACTGACGAAGAACAAGTCATTGAAGGACTTGATTTGGCTGTGAGAAAGATGAAGAAGGGAGAAATTGCCTTGGTGACGATCCATCCACAATATGCTTTTGGATCTTCTGATTCACCCCAAGATCTAGCTGTGGTTCCTGCAAACTCAACTGTATATTATGAAGTTGAGCTAGTTTCTTTCGTCAAAGAAAAAGAATCTTGGGATCTGAACACAGCAGAAGAGAAAATAGAAGCAGCAGGTAAAAAGAAGGAAGAAGGGAATATTTTGTTCAAAGCTGGAAAATATGATAGAGCATCAAGGAGATATGAAAAGGCTGTGCGCTACATTGAATACGATACTTCTTTCAGCGATGAAGAGAAGCAACAGAGCAAGGCACTGAAGATTTCGTGCAACCTCAACAATGCTGCGTGCAAATTGAAAGTCAAAGATTACAAGCAAGCAGAGAAGCTCTGTACAAAGGTGTTGGAACTTGACAGTCGGAACGTGAAAGCTCTCTATAGAAGGGCCCAGGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGCAGGATATCAAAAAAGCCCTTGAGATAGACCCAGATAATAGGGAAGTGAAGATCGAATACAGACAGTTGAAAGAGAAAGTGAGGGAATACAACAAGAGAGATGCCCAGTTCTATGGCAACATTTTTGCAAAAATGAACAAGCTGGAGCAGGCGACGTCTGCTAATTCAGCAGGGAAGCAGGAGGCAGTGCCAATGACCATTGATAGCAAAGCTTAG 1728 44.91 MEDDFEFPSASNVDEEMGLPEDEAESSVLKVGEEKEIGKNGLKKKLVKEGEGWETPETGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGESAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVKGDGWDKPKDLDEVSVLYEARLEDGTLISKSDGAEFTVEKGYFCPALATSVKTMKKGEKALLTVRPQYAFGESGRPGAGEEGAVPPNATLQITLQLVSWKTVTEVTKDKKVLKKTQKEGEGYEQPNEGAVVQVKLTGKLADGMIFTKKGDDEKPFEFKTDEEQVIEGLDLAVRKMKKGEIALVTIHPQYAFGSSDSPQDLAVVPANSTVYYEVELVSFVKEKESWDLNTAEEKIEAAGKKKEEGNILFKAGKYDRASRRYEKAVRYIEYDTSFSDEEKQQSKALKISCNLNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNREVKIEYRQLKEKVREYNKRDAQFYGNIFAKMNKLEQATSANSAGKQEAVPMTIDSKA 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7458393 7461978 + CaPI482276_05g008410.1 Cam05g0841 126245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0841 575 SUPERFAMILY TPR-like 396 550 IPR011990 GO:0005515(InterPro)
Cam05g0841 575 Gene3D - 265 389 IPR046357 GO:0003755(InterPro)
Cam05g0841 575 Gene3D - 151 264 IPR046357 GO:0003755(InterPro)
Cam05g0841 575 Pfam Tetratricopeptide repeat 484 517 IPR019734 GO:0005515(InterPro)
Cam05g0841 575 Coils Coil 517 537 - -
Cam05g0841 575 SUPERFAMILY FKBP-like 269 399 - -
Cam05g0841 575 SMART tpr_5 401 434 IPR019734 GO:0005515(InterPro)
Cam05g0841 575 SMART tpr_5 450 483 IPR019734 GO:0005515(InterPro)
Cam05g0841 575 SMART tpr_5 484 517 IPR019734 GO:0005515(InterPro)
Cam05g0841 575 FunFam Peptidylprolyl isomerase 265 385 - -
Cam05g0841 575 MobiDBLite consensus disorder prediction 1 34 - -
Cam05g0841 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755(InterPro)
Cam05g0841 575 FunFam Peptidylprolyl isomerase 388 544 - -
Cam05g0841 575 SUPERFAMILY FKBP-like 151 267 - -
Cam05g0841 575 SUPERFAMILY FKBP-like 28 151 - -
Cam05g0841 575 MobiDBLite consensus disorder prediction 1 22 - -
Cam05g0841 575 PANTHER PEPTIDYLPROLYL ISOMERASE 25 145 IPR050754 -
Cam05g0841 575 FunFam Peptidylprolyl isomerase 151 264 - -
Cam05g0841 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755(InterPro)
Cam05g0841 575 Gene3D Tetratricopeptide repeat domain 390 544 IPR011990 GO:0005515(InterPro)
Cam05g0841 575 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515(InterPro)
Cam05g0841 575 Gene3D - 31 150 IPR046357 GO:0003755(InterPro)
Cam05g0841 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755(InterPro)
Cam05g0841 575 FunFam Peptidylprolyl isomerase 32 150 - -
Cam05g0841 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 380 IPR001179 GO:0003755(InterPro)
Cam05g0841 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 144 IPR001179 GO:0003755(InterPro)
Cam05g0841 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 260 IPR001179 GO:0003755(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0765 Cam-Chr4:22026492 Cam05g0841 Cam-Chr5:7458393 1.50E-65 dispersed
Cam05g0841 Cam-Chr5:7458393 Cam09g0833 Cam-Chr9:8538649 6.90E-244 dispersed
Cam05g0841 Cam-Chr5:7458393 Cam05g0889 Cam-Chr5:8015739 1.10E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0841 K09571 - csv:101210041 1038.87