Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0843 ATGGAGAAGGAATTCTTCATGAACGATGCTGGATGCAGTTTTTATGGAATGGAAATCCAACCTAATGAGCTGAATTCAAGTGGGTTGTTTAGTCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACGTTATTGGCGGCGGCGGTGGCGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTATAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCGTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCATCAAAACCTTGCCCCATTTTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGCCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGATCAATTGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCCTTCAACATTGGTGGAATTGGATCTCAAACGGGGGTTCAAGAAGGCGAGCAGCAAAGCCCAGTTCAAAAGGGGAATTCAATGCCAATCCCCAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGTGATTCGCGAGAGGGATCTTCGGTTTCCGAGCAGATTACAGTTGGGGAATTGGGTTTGAAAGGTAAAGCTGAAACCAACACTAGAAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAGAAAGAGATTGATGCTGCAAAAGGGAAGTCAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATCCAAATCAGAAACAAAACAATGATAATTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGTCACAGTTTGGCTGAAAGAGTTCGACGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAGGATCTCGTCCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTCGAGTTTCTTTCAATGAAATTGGCAACTGTGAATCCAAGGATGGATTTTAACATGGAGACCCTTGTACCAAAGGATATCTTCAAAGGTCCCGGTTCTTCACCGCATACAGGTTACCCTATGGATTCATCTGTGCCCCAATTTGCATATGATTATCAATCTATGCACATGCCTCCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAACAATTCTCAGTTGCCTCAGCAAGTGGTGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGCGGATACAACGAAGTCGTGAACGGAATCCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGATGAGATGAAAAGTGAATTGTAG 1644 43.0 MEKEFFMNDAGCSFYGMEIQPNELNSSGLFSPNWENSMDQSDLFESTLSSIVSSPANSHVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSIAGAGVESGKLSRVSSNKSFNIGGIGSQTGVQEGEQQSPVQKGNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQITVGELGLKGKAETNTRKRKSVQTGQAKDVKAAVENHESNGKKIKPDEVTKKEIDAAKGKSEAKDGTKASGDPNQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSPHTGYPMDSSVPQFAYDYQSMHMPPLHSSISNGTEKQFSVASASGVMQRNLSGQMPSGYNEVVNGIQISKFWEDELHTVVQMGYGQNQLQNANDEMKSEL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7485589 7487910 - CaPI482276_05g008430.1 Cam05g0843 126247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0843 547 Gene3D - 357 431 IPR036638 GO:0046983(InterPro)
Cam05g0843 547 MobiDBLite consensus disorder prediction 236 262 - -
Cam05g0843 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 430 IPR036638 GO:0046983(InterPro)
Cam05g0843 547 MobiDBLite consensus disorder prediction 204 351 - -
Cam05g0843 547 SMART finulus 366 416 IPR011598 GO:0046983(InterPro)
Cam05g0843 547 MobiDBLite consensus disorder prediction 204 227 - -
Cam05g0843 547 CDD bHLH_AtBPE_like 350 435 - -
Cam05g0843 547 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 140 491 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam05g0843 547 FunFam Basic helix-loop-helix transcription factor 357 430 - -
Cam05g0843 547 MobiDBLite consensus disorder prediction 330 344 - -
Cam05g0843 547 Pfam Helix-loop-helix DNA-binding domain 364 411 IPR011598 GO:0046983(InterPro)
Cam05g0843 547 MobiDBLite consensus disorder prediction 271 329 - -
Cam05g0843 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 410 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0843 Cam-Chr5:7485589 Cam09g0835 Cam-Chr9:8577032 3.40E-67 dispersed
Cam05g0843 Cam-Chr5:7485589 Cam02g0519 Cam-Chr2:5910378 6.10E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51899 PF00010 HLH 1.20E-05 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0843 - - - 0.0