Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam05g0874 | ATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAATGCTGAGAGTTACACGAAAGATGTCGGCTCCAAGTGCCGAAACGGGAAGGAAAAGGCAGCTTGGGCTGATTGTTTAAAGCTTTACCAAAACACCATCCTTCAACTCAACCAAACTCTAGATTCCTCTACTAGCTGTACTGATTTCGATATCCAAACCTGGCTTAGTACTGCCTTAACCAACCTCGAAACATGTCGCACCGGGTTCGCCGAGCTTAATGTTTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACAAGGCTAATAAGCAACAGTTTGGCTATTAACAATGCTTCAGGAGGTGGGGTATTGGGGAAGGAAACATATAAAAAGGGTTTTCCAAGTTGGGTTTCAGGTGGTGATAGGAGGTTATTGCAGTCGTCGTCGTCGTCGTCATCGTCTTCAATAAAGGCGGACATTGTGGTGGCTCAGGACGGGTCCGGTAATTATACGACGGTCGGAGCTGCAGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGTTGATTGGAGATGGAATGAGATTTACTTTCATTACTGGAAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGAGGCATCACATTCCGAAACACCGCAGGTCCTGAAAACCATCAAGCAGTAGCTCTCCGATCAGGCGCGGATCTTTCGGTTTTCTACCGTTGTGCATTCGAAGGATATCAAGACACCCTCTACGTGCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGCACAGTAGATTTCATATTTGGAAATGGTGCAGTTGTTGTACAAAACTGCATGATTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTGACCGCTCAAGGACGAACTGACCCAAATCAAAACACTGGCATTTCAATTCACAATTCACGAGTGATGGCTACAGATGATTTGAAAGCAGTGGAGAGCAGAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTTGATAATTTGGTTGATCCAGTGGGTTGGTTGGAATGGGATGGTGAATTTGCACTTAATACTTTATATTATGGAGAGTATAACAATATTGGTCCTCGTTCATCCACTACTCAGCGAGTGAATTGGAAAGGCTATCGTGTTATAACCAATGAAACTGAGGCATCAGAGTTTAGTGTCCAAAATTTCATTGCTGGCCAGTCGTGGTTGCCGGATACAGAGGTCCCATTCACTCCTGGACTTTAG | 1413 | 43.1 | MTEFKKMVIQFAMERALNAESYTKDVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTSCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTRLISNSLAINNASGGGVLGKETYKKGFPSWVSGGDRRLLQSSSSSSSSSIKADIVVAQDGSGNYTTVGAAVEEAGKRKGNGRFVIQVKRGVYEENVEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNGAVVVQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKAVESRVKTYLGRPWKEYSRTVFMKTYLDNLVDPVGWLEWDGEFALNTLYYGEYNNIGPRSSTTQRVNWKGYRVITNETEASEFSVQNFIAGQSWLPDTEVPFTPGL | 470 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7890130 | 7892657 | - | CaPI482276_05g008740.1 | Cam05g0874 | 126278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam05g0874 | 470 | PANTHER | PECTINESTERASE | 4 | 461 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Cam05g0874 | 470 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 1 | 117 | IPR035513 | - | |
| Cam05g0874 | 470 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 3 | 116 | IPR035513 | - | |
| Cam05g0874 | 470 | SMART | PMEI_2 | 1 | 114 | IPR006501 | GO:0004857(InterPro) | |
| Cam05g0874 | 470 | Pfam | Plant invertase/pectin methylesterase inhibitor | 4 | 114 | IPR006501 | GO:0004857(InterPro) | |
| Cam05g0874 | 470 | NCBIfam | pectinesterase inhibitor domain | 3 | 116 | IPR006501 | GO:0004857(InterPro) | |
| Cam05g0874 | 470 | Pfam | Pectinesterase | 158 | 455 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cam05g0874 | 470 | CDD | PMEI-like_3 | 3 | 117 | - | - | |
| Cam05g0874 | 470 | ProSitePatterns | Pectinesterase signature 2. | 303 | 312 | IPR033131 | - | |
| Cam05g0874 | 470 | FunFam | Pectinesterase | 152 | 470 | - | - | |
| Cam05g0874 | 470 | SUPERFAMILY | Pectin lyase-like | 153 | 469 | IPR011050 | - | |
| Cam05g0874 | 470 | Gene3D | - | 151 | 470 | IPR012334 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g0487 | Cam-Chr1:5146441 | Cam05g0874 | Cam-Chr5:7890130 | 3.70E-196 | dispersed | |
| Cam01g0651 | Cam-Chr1:7169517 | Cam05g0874 | Cam-Chr5:7890130 | 9.50E-128 | dispersed | |
| Cam02g0062 | Cam-Chr2:1734524 | Cam05g0874 | Cam-Chr5:7890130 | 1.30E-76 | dispersed | |
| Cam02g0063 | Cam-Chr2:1739963 | Cam05g0874 | Cam-Chr5:7890130 | 1.60E-83 | dispersed | |
| Cam05g0275 | Cam-Chr5:2658068 | Cam05g0874 | Cam-Chr5:7890130 | 3.90E-107 | dispersed | |
| Cam05g0276 | Cam-Chr5:2673426 | Cam05g0874 | Cam-Chr5:7890130 | 8.50E-153 | dispersed | |
| Cam05g0874 | Cam-Chr5:7890130 | Cam10g0560 | Cam-Chr10:8498262 | 1.70E-152 | dispersed | |
| Cam05g0874 | Cam-Chr5:7890130 | Cam05g0877 | Cam-Chr5:7920701 | 6.50E-06 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam05g0874 | K01051 | - | csv:101211449 | 857.055 |