Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0890 ATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACGAATGATGAAGCCCTAGACAGCTTCCAGGTAGCTCCAAGAACAGAAGCCCTAAAATCAACCGGTGAGTCTAAAGTGACGGAGCTCGCGGCAGCTGCTCCACCACCGGGGTTTTCAGCGGCGGCTGATGCACCACCGGCGAGTGTAGCGGTTTCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGATGGGAAGCGGTCACTGACATTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACTGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAATCAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGGGCTATTTGCATTCTTTCTGCAAATGGTACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACGTATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCTACACAGAACGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCACTTGCGGGTCAAGATGGGCGAGTCGTTGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTAGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAGAAGCCAAAAAAGCCTAGAAACGAGTCCACAACCATTTTCTTTCCTCCCGGCAACACTGTCACTGGTGAAGAAATGAAGATAATGTATCCTGGCGGTAACAAGCCTATTCTCACGACACCGTCCTATCAAGAACAACATAATCCGCCGTCCCCTAGCCCGGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGATCAAGAACCAAAAACACAAAGTCAATCAAACTGTGAGATGATAGGTGCCCTAGAGTCCATTAGGCTTCTTTGTGATTCTTGCTATCAAGTGTCTTTTTACAGGCTTTAA 1113 47.62 MEEKETGVSRFTVTNDEALDSFQVAPRTEALKSTGESKVTELAAAAPPPGFSAAADAPPASVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIIKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPGNTVTGEEMKIMYPGGNKPILTTPSYQEQHNPPSPSPVTGFKISSTDNLPLSDQEPKTQSQSNCEMIGALESIRLLCDSCYQVSFYRL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8028536 8032684 - CaPI482276_05g008900.1 Cam05g0890 126294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0890 370 Gene3D - 145 275 - -
Cam05g0890 370 MobiDBLite consensus disorder prediction 262 283 - -
Cam05g0890 370 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Cam05g0890 370 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 265 - -
Cam05g0890 370 CDD DUF296 144 258 IPR005175 -
Cam05g0890 370 MobiDBLite consensus disorder prediction 302 342 - -
Cam05g0890 370 FunFam AT-hook motif nuclear-localized protein 1-like 145 276 - -
Cam05g0890 370 MobiDBLite consensus disorder prediction 29 85 - -
Cam05g0890 370 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Cam05g0890 370 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 309 IPR039605 GO:0003680(InterPro)
Cam05g0890 370 MobiDBLite consensus disorder prediction 297 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0890 Cam-Chr5:8028536 Cam11g0045 Cam-Chr11:2032285 6.30E-65 dispersed
Cam01g0520 Cam-Chr1:5498864 Cam05g0890 Cam-Chr5:8028536 1.90E-88 transposed
Cam01g0355 Cam-Chr1:3974678 Cam05g0890 Cam-Chr5:8028536 1.50E-70 wgd
Cam05g0890 Cam-Chr5:8028536 Cam06g0196 Cam-Chr6:3789490 2.10E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0890 - - - 0.0