Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0932 ATGGACTCTTTTTCAACTTTTTATGAAGACTACTTCTCCAGTTCCGAGAGTAGTAATTCCCGCCGCCCTATCTTTTCCGATGAGGATATTATGTTGGCGGCCAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGGTCTACAGAGGGGTCAGGAGGAGAAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCTGCCATCGCGCTTAGAGGTCTCACTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCTGTGCCGGCGTCTGCTGACGCCAGAGATATCCGGAAGGCGGCAGCAGAGGCGGCGGAGGCATTCCGACCCGTTGAGTCATGTGGGTCTTCTGCTGACGACTCAAGGACGGAAAATGAGATAACGGCGGAGACGACGCAGGAAAACGTGAATTACATGGATGAGGAGGCAGTTTTTGGGATGCCAGGTTTTTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA 636 52.52 MDSFSTFYEDYFSSSESSNSRRPIFSDEDIMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGLTACLNFADSAWRLPVPASADARDIRKAAAEAAEAFRPVESCGSSADDSRTENEITAETTQENVNYMDEEAVFGMPGFLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8425898 8426533 - CaPI482276_05g009320.1 Cam05g0932 126336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0932 211 SMART rav1_2 53 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0932 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677(InterPro)
Cam05g0932 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 211 IPR045277 GO:0003700(InterPro)
Cam05g0932 211 CDD AP2 54 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0932 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0932 211 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Cam05g0932 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0932 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0932 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0932 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0932 Cam-Chr5:8425898 Cam10g1889 Cam-Chr10:32980969 1.60E-33 dispersed
Cam05g0932 Cam-Chr5:8425898 Cam05g0933 Cam-Chr5:8444587 9.00E-24 tandem
Cam01g0578 Cam-Chr1:6153415 Cam05g0932 Cam-Chr5:8425898 5.00E-64 transposed
Cam01g0313 Cam-Chr1:3470650 Cam05g0932 Cam-Chr5:8425898 2.10E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51908 PF00847 AP2 1.30E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0932 - - - 0.0