Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0933 ATGTCTGATAATAATAATAATTCTCCCGGCCGCCCTGGTCGCCACCCCCTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACATACCCCACTCCCGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCATGCCTCCCTTAATTTCCCCGACTCTCGTAATTCCTATCGCATTCCTCTTTCCACTTCCGCTTCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCCGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCAGATACCGACGGCGGTGGGCCCTCCTCCCATGCCACGGCGGATTCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA 579 55.79 MSDNNNNSPGRPGRHPLFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPHASLNFPDSRNSYRIPLSTSASDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSDTDGGGPSSHATADSSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8444587 8445165 - CaPI482276_05g009330.1 Cam05g0933 126337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0933 192 MobiDBLite consensus disorder prediction 102 137 - -
Cam05g0933 192 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Cam05g0933 192 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677(InterPro)
Cam05g0933 192 CDD AP2 16 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0933 192 MobiDBLite consensus disorder prediction 158 192 - -
Cam05g0933 192 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0933 192 SMART rav1_2 17 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0933 192 MobiDBLite consensus disorder prediction 169 192 - -
Cam05g0933 192 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0933 192 Pfam AP2 domain 18 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0933 192 MobiDBLite consensus disorder prediction 102 145 - -
Cam05g0933 192 MobiDBLite consensus disorder prediction 1 23 - -
Cam05g0933 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 190 IPR045277 GO:0003700(InterPro)
Cam05g0933 192 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g0933 192 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0313 Cam-Chr1:3470650 Cam05g0933 Cam-Chr5:8444587 3.40E-38 dispersed
Cam05g0933 Cam-Chr5:8444587 Cam10g0361 Cam-Chr10:5855238 1.90E-41 dispersed
Cam05g0932 Cam-Chr5:8425898 Cam05g0933 Cam-Chr5:8444587 9.00E-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51909 PF00847 AP2 1.80E-10 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0933 - - - 0.0