Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0959 ATGGTCCCTCCCTACACAATAGGGGTCGGGGCACCGATCATGTCAAAGCCTCTTGCCGAACAAATTATTGAAGTTGGTTCTGAGTCGGCTGGTGATCCAAAAAAGACTGCTGAACAGAATGTCGAAGGAACACAGCCTACCGAATGTGTTCTGAAGTCCGCAGGACCCGCCCAAGGGCAAGGCAAGCCGAAACCTCTCCACTGGAGAAATGGGAGTAAAGAACTTCTGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCACCGTCTTCAGTAAATGGTTCAATTCCTGGGATCAAACTGTCAACTTATAGACGCCGCTTGAACAATGGAAATGAGGTCGCTCAAAATGATGCAAATCCCCAGCAAATATGCTCACTGAAAAGAAACAAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGATTGGCGCTTGGTATCCCTTGTCTAGATGGGCTTGAGGAAGCTGAAGCACAATGTGCATTGCTAAATTCAGAATTCTTATGTGATGGATGTTTTACTTCAGATTCAGATGCTTTCCTTTTTGGTGCTAGGACGGTGTATAGGGATATCTGCCTTGGAGATTCCGGTCATGTAGTTTGTTATGAAATGGATGACATCGAAAGACAATTAGGATTCGGAAGGAACTCAATGATTACGTTGGCTCTACTTCTTGGGAGTGACTACTCGCAGGGCGTTTATGGCATGGGTCGCGATTCTGCTTGTCAGATTGTTAAAGCAGTAGGAGACAGTGCTGTCCTCCAAAAAATTGCATCTGAGGGACTGTCTTTCGCTAAGAAGGGGAAGAATTCCAAGAAGCAAGGACTTCCTAATTCTGGGAATGGACAGTATATGCATAAATGCGATCAGTTTTCAGAAGTCATTGATGCCTATTTGAAACCCAAATGCCACTCAGCTGATTCTGAAGCCGTGAGTAGGGTTCTTGTTCAGCACCCTTTTCAACGTATCAAACTTCAGCAGATATGTGCCGAATTTTTCGCATGGCTTCCTGAAAAAACAGATGAATACATTCTCCCAAAGGTAGCAGAAAGAGATCTACGGCGATTTGCAAACATTCGATCTAAAACATCAGAACTTGGTTTCAATATTCCCCTTCAACAGGTACCAATTAATTGTCCTGTTTCTGGAATTGTCAAGCACCGAAAAGTCCAAGGCAATGACTGCTATGAGGTTTCTTGGAAAAATATTGATGGACTTGATTCATCTGTTGTGCCAGCAGATCTCTTGCGGAGTGCCTGTCCCGAGATGATCATAGAATTTGAGGAGCAAAGGGCTGAAGGAAGAAAACAAAATAAGCGCAAAACTAAAACAAAGAAGTCGGAGGCTGCTGTGGCTGAAATTGATAAAAGACTTCAAACTTTGTTGCTTGATATTGAATCTGAAAGCAGGGCAGCTCATAATCTCTCCCAGGTTTCAATAGTTTCAGAGACTTCTGGCACTGGTGTTGATGAACTGAACCAAGAGCGATTTCCTGACGTTGAACCAATCATTGTCGACCATTCTCGTAGCTGTAGCAAAGAGAGGATTGAGGTCATTAATCTCTTAAGCCCTTCACCTGCAATGCAAACCCGTAAGGCTTCAAAATTTCAACAGAAAAATAGTCAAAAGATTGATGTAATTGATTTGAGTGATACAGAAACTGATCAGTCACCTGAACATGAGAGAAAGGCAAGAGAGTTGAGATCTTTCTTAGCTACTTTAAAGGAGGCGTTTTCCTTACTGCTCACCCAAAAAAAACCCACTGATTATCCACTCCAAGATGAGTAA 1803 42.87 MVPPYTIGVGAPIMSKPLAEQIIEVGSESAGDPKKTAEQNVEGTQPTECVLKSAGPAQGQGKPKPLHWRNGSKELLGYLRIVQENSPTSPSSVNGSIPGIKLSTYRRRLNNGNEVAQNDANPQQICSLKRNKGSEFSLMIKEAKALGLALGIPCLDGLEEAEAQCALLNSEFLCDGCFTSDSDAFLFGARTVYRDICLGDSGHVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRDSACQIVKAVGDSAVLQKIASEGLSFAKKGKNSKKQGLPNSGNGQYMHKCDQFSEVIDAYLKPKCHSADSEAVSRVLVQHPFQRIKLQQICAEFFAWLPEKTDEYILPKVAERDLRRFANIRSKTSELGFNIPLQQVPINCPVSGIVKHRKVQGNDCYEVSWKNIDGLDSSVVPADLLRSACPEMIIEFEEQRAEGRKQNKRKTKTKKSEAAVAEIDKRLQTLLLDIESESRAAHNLSQVSIVSETSGTGVDELNQERFPDVEPIIVDHSRSCSKERIEVINLLSPSPAMQTRKASKFQQKNSQKIDVIDLSDTETDQSPEHERKARELRSFLATLKEAFSLLLTQKKPTDYPLQDE 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8648141 8653382 + CaPI482276_05g009590.1 Cam05g0959 126363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0959 600 MobiDBLite consensus disorder prediction 551 568 - -
Cam05g0959 600 Gene3D - 219 278 - -
Cam05g0959 600 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 218 365 IPR036279 -
Cam05g0959 600 Gene3D - 95 217 - -
Cam05g0959 600 CDD CSD 389 436 - -
Cam05g0959 600 ProSiteProfiles Chromo and chromo shadow domain profile. 384 444 IPR000953 -
Cam05g0959 600 Gene3D - 384 451 - -
Cam05g0959 600 SMART xpgineu 148 218 IPR006086 GO:0004518(InterPro)
Cam05g0959 600 SUPERFAMILY Chromo domain-like 386 437 IPR016197 -
Cam05g0959 600 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 223 238 IPR006084 -
Cam05g0959 600 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 168 188 IPR006084 -
Cam05g0959 600 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 147 164 IPR006084 -
Cam05g0959 600 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 94 539 IPR006084 GO:0017108(PANTHER)
Cam05g0959 600 Pfam XPG I-region 151 233 IPR006086 GO:0004518(InterPro)
Cam05g0959 600 MobiDBLite consensus disorder prediction 549 568 - -
Cam05g0959 600 FunFam Flap endonuclease GEN-like 1 218 276 - -
Cam05g0959 600 SUPERFAMILY PIN domain-like 95 233 IPR029060 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0959 K15338 - - csv:101214962 823.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0959 Cam-Chr5:8648141 Cam10g1235 Cam-Chr10:25769909 3.90E-24 dispersed
Cam05g0959 Cam-Chr5:8648141 Cam01g2280 Cam-Chr1:35071107 3.70E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008050 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 35