Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0968 ATGAACTATTCATCGCTTGTGAGTTCGCGGATAGTCTGCAGATTATTTTCAACTTCTTTTATTGTGCGTCGAACAATTTGGAATCGAAGCTTTGGTAGTGATGATCGATTTGAGCTTTTTGTGGAACCCTATAAGAAGAGGTTGGAGGGATCAGAGTTTGGTTACTTTGCTGATGAAAAATCGGATTCTTGTGAGATTGAGAGTGGTAGATGCGATGGTTTTTCATTGAGAAGGGGTTTTCTAGAGGGTGCGAAAACAGATGCTGAAAAAGTTATTGAGATTCTCAAACAGGATGGTCCTGGATTTGACACATTTTTGGCCTTAGATGAACTGCAACTCCAGGTCTCAGGGGTACTTGTTGGGGAAGTTTTGAAGGGGATTTTGAAAAGTACAGGTGTTCTAAGCAAAAATCAGTGTGCAAAATTGGGGTACAAGTTTTTCGTATGGTCCAGTAAGATTGAGAATTATAGACACACTGTGAAATCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCAAGGCTATGTGGAGGTTACTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTATGATACTGATATGTACTTGTGGTGATGCAGGCTTGGCTAAGAAAGTTGTTGAGAGGTTTATCAAATCGAAAACATTCAATTTCAGGCCGTTTAAACATTCATATAATGCCATTCTTCATGGACTACTTGTTGTAAAACAGTACAAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGATGGTCACAGCCCAGACATTCTCACATATAATGTGCTATTGTTTGCAAGATGCAAATTGGGGAAATTGGATCAATTTCACAGATTGCTTGATGAAATGGCCAGGAGTGGGTTTTCCCCTGATTTTCATACTTATAACATTCTTCTTTACGTTCTTGGCAAAGGAGACAAACCCCTTGCTGCTCTAAATCTTTTGAACCACATGAGGGAAGTGGGCTTTGATCCGAGTGTTCTTCACTTCACGACGCTTATAAATGGGCTTAGTCGGGCTGGAAATTTGGATGCTTGTAAATATTTTTTTGATGAACTAGGAAACTATGGCTGCATTCCTGATGTTGTTTGCTACACTGTGATGATCACAAGCTATACAGAGGCTGGGGAGCATGAGAAAGCTAGGGAATATTTTGAAGAGATGGTAATTAAGGGCCAGCTCCCTAATGTATTTACGTACAACTCCATGATTCGTGGTTTTTGTATGGTGGGTAAGTTCGAGGAGGCTTACTCTATGCTCACTGAAATGGAATCCCAAGGTTGCAGACCAAATTTTCTTCTATATAGTACCCTTGTAAGTTATTTGCGAAATGCAGGAAAGCTTTCCGAGGCTCACAAAGTTATAATGCACATGGTCGAGAAGGGGCAATATGCCCATTTAGTGACAAAATTTAAGGGATATAGGAGATGGTAG 1458 40.05 MNYSSLVSSRIVCRLFSTSFIVRRTIWNRSFGSDDRFELFVEPYKKRLEGSEFGYFADEKSDSCEIESGRCDGFSLRRGFLEGAKTDAEKVIEILKQDGPGFDTFLALDELQLQVSGVLVGEVLKGILKSTGVLSKNQCAKLGYKFFVWSSKIENYRHTVKSYHMIMKIFAECEEFKAMWRLLDEMTEKGYPVTARTFMILICTCGDAGLAKKVVERFIKSKTFNFRPFKHSYNAILHGLLVVKQYKLIEWVYQQMLLDGHSPDILTYNVLLFARCKLGKLDQFHRLLDEMARSGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFDPSVLHFTTLINGLSRAGNLDACKYFFDELGNYGCIPDVVCYTVMITSYTEAGEHEKAREYFEEMVIKGQLPNVFTYNSMIRGFCMVGKFEEAYSMLTEMESQGCRPNFLLYSTLVSYLRNAGKLSEAHKVIMHMVEKGQYAHLVTKFKGYRRW 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8707535 8708992 + CaPI482276_05g009680.1 Cam05g0968 126372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0968 485 Pfam PPR repeat 338 366 IPR002885 -
Cam05g0968 485 SUPERFAMILY TPR-like 372 469 IPR011990 GO:0005515(InterPro)
Cam05g0968 485 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 145 474 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Cam05g0968 485 Pfam PPR repeat family 368 416 IPR002885 -
Cam05g0968 485 Pfam PPR repeat family 263 310 IPR002885 -
Cam05g0968 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Cam05g0968 485 NCBIfam pentatricopeptide repeat 338 370 IPR002885 -
Cam05g0968 485 NCBIfam pentatricopeptide repeat 406 439 IPR002885 -
Cam05g0968 485 NCBIfam pentatricopeptide repeat 267 299 IPR002885 -
Cam05g0968 485 NCBIfam pentatricopeptide repeat 301 334 IPR002885 -
Cam05g0968 485 NCBIfam pentatricopeptide repeat 162 194 IPR002885 -
Cam05g0968 485 NCBIfam pentatricopeptide repeat 371 404 IPR002885 -
Cam05g0968 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Cam05g0968 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Cam05g0968 485 Gene3D Tetratricopeptide repeat domain 327 398 IPR011990 GO:0005515(InterPro)
Cam05g0968 485 Gene3D Tetratricopeptide repeat domain 254 326 IPR011990 GO:0005515(InterPro)
Cam05g0968 485 Gene3D Tetratricopeptide repeat domain 399 470 IPR011990 GO:0005515(InterPro)
Cam05g0968 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Cam05g0968 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Cam05g0968 485 Pfam Pentatricopeptide repeat domain 427 470 IPR002885 -
Cam05g0968 485 Gene3D Tetratricopeptide repeat domain 125 247 IPR011990 GO:0005515(InterPro)
Cam05g0968 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0968 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g666 . . Bda05g00073 . Bpe03g00288 . Bma10g01222 . Cmo16g00134 Cmo18g01269 . . . . Sed07g1105 . Cpe14g00109 Bhi01g01321 Tan01g0253 Cmetu06g1773 . Hepe07g0160 Mch10g0155 . . . . . . . . . . Cone14ag0088 Cone15ag0092 Lsi05g01227 . . . Blo07g00412 . . . . . . . . . . . Cma18g01246 Car16g00114 Car18g01152 Cpe09g00092 . . . . . . . . Cla05g00880 Cam05g0968 Cec05g0972 Cco05g0972 . Cmu05g0912 Cre05g0996 . Csa03g01710 Chy06g00946 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006768 1 1 1 1 1 1 2 1 1 1 1 0 2 0 1 2 1 2 2 1 1 1 1 2 2 2 1 1 1 1 36