Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0976 ATGGAATCTTTATGGAAACTTCTATATTTGCTGGAACCTGCACCTGCCACTCTCATTGTGACTGCAGTGGCTGTTACATTTGGATCTGCTTTCCGGGCCCTAAATTATGGGAAGGAAATGGAGCGAAACCGTGACTTTTCAGAAGCATCCATTACCTTAGACAGATCCCAAGCGCTAATGATCCCAGTTATGAGTTCTTGCAGTTTGCTTTTGATGTTCTACCTGTTTTCTTCTGTGTCCCAACTTCTTACTGCATTCACAGCAGTTGCTTCTGTCTCATCCCTCTTCTTCTGTTTATCTCCTTACATGGCCTATTTAAAATCCCAGTTTGGATTGGCTGATCCTTATGTATCAAGGTGTTGTTCCAAGTCATTTACACGTATTCAAGGGTTGTTGTTGTTGGCATGTTCTGGTTTAGTTGCAGCTTGGCTTGTTTCTGGGCATTGGATATTAAACAATTTGTTAGGAATTTCAATATGTGTTGCATTTGTCAGCCATGTACGTCTCCCTAATGTTAAAATATGTGCAATGCTCCTAGTTTGTCTCTTTGTATATGATATATTCTGGGTCTTCTTCTCTGAGAGATTCTTCGGGGCAAATGTAATGGTATCTGTAGCAACTCAGCAAGCATCAAATCCTGTTCACACAGTTGCCAATAGTCTGAGTCTTCCTGGGCTGCAATTGATTACTAAGAAGCTGGAGTTACCTGTCAAGATAGTTTTTCCAAGAAACTTACTTGGTGGAGTAATTCCAGGAAAAAATGCCACTGATTTCATGATGCTTGGTCTTGGTGATATGGCAATTCCTGCCATGTTTCTAGCTCTAGTTCTTTGTTTTGACCACCGGAAAAGTAGGGATACAGTCAATCTCTTGGATTTCCACACAAGGGGCCACAAGTACATTTGGTATGCCCTGCCCGGATATGCCATTGGACTGGTGACCGCTCTAGCAGCTGGCGTTTTGACTCACTCACCTCAACCTGCTCTATTGTATCTGGTGCCTTCTACATTAGGACCTGTTATTGCAATATCTTGGATAAGGAAGGATTTTTTGGAGTTATGGGAAGGTCCCTCGCCGAACCCTAATGATAAAGTAGTAGAAGTGACACCTCTTTGCGGGGTGTTCAATGAAAACCCTTTATCGTATTTGGTCTCTGTTGACGGTTTCAACTTCCTTATCGACTGTGGTTGGAACGACCACTTCGATCCTGCTCTTCTTCAACCTTTATCCAGGGTGGCATCCACGATTGATGCAGTTTTGATATCACATCCTGATACACTTCACCTCGGTGCTCTTCCTTATGCCATGAAACAACTTGGACTTTCTGCTCCAGTTTATTCCACTGAACCCGTTTACCGATTGGGTCTTCTTACAATGTATGATCAGTTTATCGCGAGGAAGCAAGTATCAGAGTTTGATCTATTTACGCTGGATGATATCGATTCTGCTTTCCAAGTTGTAACCAGACTAACATACTCCCAGAATCATCATCTTTCAGGCAAAGGAGAGGGAATAGTTATTGCCCCTCATGTGGCTGGGCATCTATTGGGTGGAACTCTATGGAAGATAACTAAGGATGGAGAAGATGTTATATATGCTGTTGACTTCAACCACCGCAAGGAAAGGCATCTGAATGGAACCATTCTAGAGTCATTTGTGCGACCTGCTGTATTGATCACTGATGCTTATAATGCTCTAAATAATCAGCCATACAGACGGCAAAAGGACAAAGAATTTGGAGATACTATTCAGAAGACCTTAAGATCTAATGGAAATGTCTTACTTCCTGTTGATACTGCTGGGCGAGTGTTGGAGCTTATTCAAATTTTGGAATGGTACTGGGAAGAGGAAAGTTTAAACTATCCCATTTTCTTTTTAACTTACGTTGCATCCAGCACAATTGATTATATCAAGAGTTTCCTAGAGTGGATGAGTGATACAATAGCAAAGTCTTTTGAACACACACGGAGCAACGCTTTTCTTCTCAAGCATGTTACCCTTCTAATCAACAAAAGTGAACTTGATAATGCTCCAGATGGTCCAAAGGTTGTTTTAGCATCAATGGCGAGTTTGGAAGCTGGTTACTCACATGACATTTTTGTTGACTGGGCAATGGATGCCAAAAACCTCGTCCTTTTTTCTGAAAGAGGCCAGTTTGGCACTTTGGCCCGCATGCTTCAAGCAGATCCACCTCCCAAAGCTGTTAAGGTAACTGTGTCTAAGAGAGTCCCTTTGACTGGAGATGAGCTTATTGCTTATGAAGAAGAGCAAAACAGGAAAAAGGAAGAAGCTCTTAAGGCTAGTTTGCTTAAGAAGGAACAATCTAAAGCATCTCATGGAACTGAGAATGATACCAGCGATCCAATGATCATTGATGCTAGCAGTAATGTAGCACCAGATGTAGGGGGTTCACATGGAGGTGCATACAGAGACATACTAATTGATGGCTTTGTTCCTCCTTCAACCAGCATTGCTCCAATGTTTCCCTTTTATGAAAACACCTCCGCGTGGGATGATTTTGGTGAAGTAATCAATCCTGATGATTATGTAATTAAGGATGAAGATATGGACCAATCAGCGATGCATGCTGGTGGGGATGTGGATGGAAAACTAGATGAAACTGCTGCTAACTTGATTCTGGATATGAAGCCTTCGAAAGTTGTATCTAATGAATTGACAGTCCAAGTTAAATGCTCGTTGCGTTACATGGATTTTGAAGGTCGTTCAGATGGGAGATCAATTAAATCAATACTCTCCCACGTTGCTCCCTTGAAGCTTGTTTTGGTGCATGGAACCGCAGAGGCCACTGAGCATCTTAAGCAACATTGTCTTAAAAATGTCTGTCCCCATGTCTATGCCCCCCAAATTGAAGAAACGATTGATGTTACTTCTGATTTGTGTGCATATAAGGTACAACTTTCAGAGAAGCTGATGAGTAATGTGCTGTTTAAGAAGCTAGGAGATTACGAAATCGCTTGGCTTGATGCTGAAGTAGGGAAGACCGAGAATGGAACATTGTCTTTACTTCCCCTCTCAAAGGCTGCTTCGCCTCATAAATCTGTTCTTGTTGGTGATTTGAAAATGGCCGACTTCAAACAATTTCTGGCCAGCAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCTTACGCAAGGTTACAGATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGGGCCCTTATGTGAGGATTATTATAAAATTCGGGAACTTTTGTATTCACAATTTTATTTGCTATATTCAACCTCAAATTTTCTTTTTTGCAATTTCAAGTTTGAATTATCCGCAAGAGGATCTTTCATGGCTTCCACTCCCCCCACGTGTTCACCCAGCTCTCTTCAGCTTCGTCTTGCTCTCAATTGCAAGAATTGCGGCAAATTCCCTTCAGTTCTTGTTCGGGCAGGAGTGAGGAAATTGGATCCTCGCCTCCGCGTAATTTGTCACCCTATTGTTCATAATGGCGCCAAAATCGAGAGAGGAAATGGACTTCGTCGTATTGGAGTTTGTTTTGCTGGATCGGAGTCGACGGCGGATGGATTCTCTGGGTGGTCGGAATCGGATTCCCAGGGAGAGGCTTTGGACTTGCGGAGAAAGAAGTGGTTTGGAGGATTGGTGGGGATTGGAATTACTGGATTCATCCTTTTCTCTGGAATCACCTTTGCAGCATGGTCAATAAACAAGCAGAATAGTTCCAGACAAAAACCGCTGATGGAGGCCTTAAGTACGCAGCAAGAATTATTGTTGGACTCTGATACTGTTAATGATAAGCTTGGTGAAGATGAAAAGGAAGATAACAGTTTGAAGGCAGATGATGAAACTCTCGCTGGTGAAACAGGTAACCAAGAGGACTCTTGTTCATGTACAGAAAATGAAGAAACTCTCAACAAAAATAGAGTTGGTGACAGTGTTGATGTTGAGGAGTTAGCAGAAAATGATGTTGAATCTTCATCCAGCAATAACGATGTCAATAATGTTGCTTCCTTGCAAGAAGATTTCCAATCTGATTCCTCACTAACTGTTACATCAGTTGCTGCCGGAAGTTTGAGTACACTTATCTCACCTGAATCTGAGTTTGATTCTAACGTAGCTTCTTGTTTTAAAGATGTAAACAACTGTCATTCTGGTGTAGAAGTCTTAACTTCTGAACCTGAAATGAATATATTGAAAGATGAACCAGACAACTTGGCTAGCTCTAATACTAATTCAATAAACCTTAAAACTGATATTCGGGATGAAAGACCTGACACTGGTGAAAATTATGATTTCAGCTCTAATAAGTTACCAGTGTATGATGATAGTTCATCAAACTATAATTCTGGCAACCAGGATGAGACACTTGGTCCTGTAAATGAAATTACAGATTCTTCATTGGAAGGATTTTCTAGCATATCTGGCGACACAACCAAGGAATCAGGATTTTTTGACAGGGAGACTGTGGCTGAATCATCTGAAGGAGTTCTGAGCCCCAGCAAAACTGAACAGCTTTTATCTGAGGATACTGCATCAACCATAGAACAGCAAATAGAAAGAGGATTATCTGAAGCAGTATTAGTCTCTATCACAGATTATCCATTGGCTGATGATCAAGAGAAAAATCATGAAACTATCATGAATACTACTGCTGCCAAACCGGAACTACAAGAGATTTTATTTTCTTCTGCAGGTGTTCCTGCTCCTTTGGTTTCTGCAGCTGTTAAAACACTTCCCGGCAAGGTCCTAGTTCCTGCAGTAGTAGATCAGGTTCAGGGGCAGGCATTGGCAGCACTGCAAGTTTTAAAGGTGATAGAGGCTGAGGTTGAACCTAGTGATCTATGTACTCGTCGGGAATATGCTCGTTGGCTGGTGTCTGCAAGCAGTGCTCTTTCGAGGAACACAACATCCAAAGTATACCCAGCAATGTATATAGAGAATGTTACCGAGCTTGCTTTTGATGATATAACCCCCCAAGACCCTGATTTTGCATCTATTCAAGGTTTGGCAGAAGCTGGACTGATTTCAAGCAAGCTTTCGAGACATGATATTTGTTCTTCATTGGACGAAGACCAGGGTCCTTTATATTTCTCTCCCGAAAGCCCCCTATCACGTCAAGATCTTGTGAGTTGGAAGATGGCCCTTGAAAAAAGACAGCTTCCAGAGGCAGATAGAAAGATGCTCCACCAAGTTTCTGGATTTATTGATACTGATAAGATCCATCCAGATGCTTGTCCTGCACTTGTTGCTGATCTTTCTGTAGGAGAACAGGGAATAGTAGCTCTTGCATTTGGATATACAAGGCTTTTCCAGCCAGATAAGCCTGTAACAAAAGCACAAGCTGCCATTGCTCTTGCAACTGGGGAGGCTTCTGATATAGTAAGTGAGGAACTTGCAAGGATTGAAGCTGAATCAATGGCAGAAAATGCTGTTGCTGCGCATAGTGCTTTGGTAGCTCAAGTTGAGAAAGATATTAATGCTAGCTTTGAGAAGGAACTTTCCATTGAAAGAGAAAAGGTTGCGGCTGTGGAGAAAATGGCAGAAGAGGCAAAGCAAGAATTGGAAAGATTAAGATCCGAAAGAGAGAGAGATAGTATCACCTTGATGAGGGAACGCGCTTCTATTGAATCTGAAATGGAAGTTCTTTCAAGATTAAGGAATGAGTTGGAGGAGCAGTTGCAAGGCCTGCTGAGTAATAAAGTAGAGGTATCCTTTGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAATCAGGAGATTTCCCGCCTGCAGTATGAGCTTGAAGTTGAGAGAAAGGCGTTGTCTATGGCCAGAGCTTGGGCCGAGGACGAAGCAAAAAGAGCAAGAGAACAAGCAAAAGCACTCGAAGAGGCTAGGGATCGCTGGGAAAAGCATGGCATCAGAGTAGTCGTCGACAGCGATCTCCGTGAACAAGAATCTGCTGGCGATACCTGGCTTGATTCTAGCAAACAGTTTGCAGTCGAAGAAACCACAGACAGGGCTGAGAACTTAATGGAGAAGCTGAAAAGAATGGCTACAGAAGTAAGAGGGAAATCGAGAGACGTAATCGAGAAGATCATCGAGAAGATAGCTTTACTAGTATCAAACTTGAGACAATGGATTTCAAAAACTGGAGAACAGGCTGAAGATCTAAAGAATGTGGCGATTTCAAAGGCAAGTAGATCAGCAACAGAATTGCAACAGAGCACTGCAGAGTTGAGCTTGGCCCTGAAGGAGGGAGCAAAGCGTGTTGTGGGAGATTGTAGGGAAGGAGTAGAGAAAATTACCCAAAAATTTAGAACATCTTATGGTTAA 6357 42.25 MESLWKLLYLLEPAPATLIVTAVAVTFGSAFRALNYGKEMERNRDFSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLSPYMAYLKSQFGLADPYVSRCCSKSFTRIQGLLLLACSGLVAAWLVSGHWILNNLLGISICVAFVSHVRLPNVKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLLGGVIPGKNATDFMMLGLGDMAIPAMFLALVLCFDHRKSRDTVNLLDFHTRGHKYIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVIAISWIRKDFLELWEGPSPNPNDKVVEVTPLCGVFNENPLSYLVSVDGFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDIDSAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRSNGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRSNAFLLKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRKKEEALKASLLKKEQSKASHGTENDTSDPMIIDASSNVAPDVGGSHGGAYRDILIDGFVPPSTSIAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQSAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLRYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAASPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLLYSTSNFLFCNFKFELSARGSFMASTPPTCSPSSLQLRLALNCKNCGKFPSVLVRAGVRKLDPRLRVICHPIVHNGAKIERGNGLRRIGVCFAGSESTADGFSGWSESDSQGEALDLRRKKWFGGLVGIGITGFILFSGITFAAWSINKQNSSRQKPLMEALSTQQELLLDSDTVNDKLGEDEKEDNSLKADDETLAGETGNQEDSCSCTENEETLNKNRVGDSVDVEELAENDVESSSSNNDVNNVASLQEDFQSDSSLTVTSVAAGSLSTLISPESEFDSNVASCFKDVNNCHSGVEVLTSEPEMNILKDEPDNLASSNTNSINLKTDIRDERPDTGENYDFSSNKLPVYDDSSSNYNSGNQDETLGPVNEITDSSLEGFSSISGDTTKESGFFDRETVAESSEGVLSPSKTEQLLSEDTASTIEQQIERGLSEAVLVSITDYPLADDQEKNHETIMNTTAAKPELQEILFSSAGVPAPLVSAAVKTLPGKVLVPAVVDQVQGQALAALQVLKVIEAEVEPSDLCTRREYARWLVSASSALSRNTTSKVYPAMYIENVTELAFDDITPQDPDFASIQGLAEAGLISSKLSRHDICSSLDEDQGPLYFSPESPLSRQDLVSWKMALEKRQLPEADRKMLHQVSGFIDTDKIHPDACPALVADLSVGEQGIVALAFGYTRLFQPDKPVTKAQAAIALATGEASDIVSEELARIEAESMAENAVAAHSALVAQVEKDINASFEKELSIEREKVAAVEKMAEEAKQELERLRSERERDSITLMRERASIESEMEVLSRLRNELEEQLQGLLSNKVEVSFEKERINKLRKEAEIENQEISRLQYELEVERKALSMARAWAEDEAKRAREQAKALEEARDRWEKHGIRVVVDSDLREQESAGDTWLDSSKQFAVEETTDRAENLMEKLKRMATEVRGKSRDVIEKIIEKIALLVSNLRQWISKTGEQAEDLKNVAISKASRSATELQQSTAELSLALKEGAKRVVGDCREGVEKITQKFRTSYG 2118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8792148 8811754 + CaPI482276_05g009760.1 Cam05g0976 126380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0976 2118 MobiDBLite consensus disorder prediction 1440 1489 - -
Cam05g0976 2118 Coils Coil 2008 2035 - -
Cam05g0976 2118 Coils Coil 1952 1979 - -
Cam05g0976 2118 SMART psh_8 49 347 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Cam05g0976 2118 Pfam Cleavage and polyadenylation factor 2 C-terminal 1003 1096 IPR025069 -
Cam05g0976 2118 MobiDBLite consensus disorder prediction 769 789 - -
Cam05g0976 2118 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1121 2115 - -
Cam05g0976 2118 MobiDBLite consensus disorder prediction 1410 1520 - -
Cam05g0976 2118 Pfam Metallo-beta-lactamase superfamily domain 383 558 IPR001279 -
Cam05g0976 2118 MobiDBLite consensus disorder prediction 1503 1520 - -
Cam05g0976 2118 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 894 945 IPR011108 -
Cam05g0976 2118 Pfam Beta-Casp domain 603 726 IPR022712 -
Cam05g0976 2118 Coils Coil 1913 1940 - -
Cam05g0976 2118 Gene3D - 370 617 IPR036866 -
Cam05g0976 2118 FunFam Cleavage and polyadenylation specificity factor subunit 2 367 616 - -
Cam05g0976 2118 MobiDBLite consensus disorder prediction 1276 1291 - -
Cam05g0976 2118 Coils Coil 1843 1877 - -
Cam05g0976 2118 SUPERFAMILY Metallo-hydrolase/oxidoreductase 366 962 IPR036866 -
Cam05g0976 2118 Pfam Signal peptide peptidase 49 358 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Cam05g0976 2118 MobiDBLite consensus disorder prediction 1298 1313 - -
Cam05g0976 2118 CDD CPSF2-like_MBL-fold 369 564 IPR035639 -
Cam05g0976 2118 MobiDBLite consensus disorder prediction 1276 1322 - -
Cam05g0976 2118 SMART Lactamase_B_5a 378 583 IPR001279 -
Cam05g0976 2118 SMART Beta_Casp_2 603 726 IPR022712 -
Cam05g0976 2118 Coils Coil 753 773 - -
Cam05g0976 2118 Coils Coil 1882 1909 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0976 K14402 - - csv:101215673 1420.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0976 Cam-Chr5:8792148 Cam05g2510 Cam-Chr5:32916745 7.10E-44 dispersed
Cam11g1429 Cam-Chr11:27001236 Cam05g0976 Cam-Chr5:8792148 1.10E-25 transposed
Cam01g0262 Cam-Chr1:2923747 Cam05g0976 Cam-Chr5:8792148 2.00E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g705 . . Bda05g00079 . Bpe03g00282 . Bma10g01228 . . Cmo18g01275 . . . . . . Cpe14g00104 Bhi01g01307 Tan01g0241 . . Hepe07g0148 . . Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Cone1ag1162 Cone5ag0872 . . . . . Cme06g01009 Blo07g00402 . . . . . . . . . . . Cma18g01252 Car16g00109 Car18g01159 Cpe09g00085 . . . . . . . . Cla05g00889 Cam05g0976 Cec05g0980 Cco05g0979 Clacu05g0963 Cmu05g0920 Cre05g1005 . Csa03g01721 Chy06g00953 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011726 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 30