Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g0978 ATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGTGAAGAAGAAAACAAGCAAGGAAAGTTTCATCGACTCATTACACCGAAAGTTTAAGAATTCACCTGAAGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAAATGTGGTGGTGACACTATATCTGAGAAAGGGTCCAAATCACCAATATCAAGATCGCCATCACCTTCCAAAGAAGTTGCTAGATGTCAAAGTTTTGCAGAAAGATCGTGTTCTCACAAACTTCCACTTCCAGATTTGCACCCTGTAGGTGTAGGTCGCACAGATTCTGGGATTAGTGTGACAGCAAAATCCAAATTAGAGAGAAGCTCCAAGACATCTTTATTCCTACCCCTCCCTAGACCTGCTTGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGATTTGGTCACTGGTTCAGTCTTTGGTGAGTCCTCAAGTGATAGTGATGATCCCAGTGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACATTGGGGCTAGAACTGTGATAGGTTCTACTGAAGCTAGTGAAACTCTCAAGGATCAGTCTCCTACTGTCGTGCAAATAAATCTAAAAGAGGGCAAGAAATCAGAAAGCCTTCCATTTCCTCATAAGAATTCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGCCATGGGGCCTTCTTTAGCGCACCAGATAGTTCTATGTCTAGTCCCTCTAGAAGTCCCATGAGGATATTTAGCACTGAGCAAGTCATGAACGCTGCTGTTTGGGCTGGAAAATCTCACCCAGATGTCATTTTAGCTGGATCTGGCCCTTGTTCCAGTCCTGGCTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCAGGCCACTTCTTTTGGCAACAAAGTAAGGGTAGCCCCGAATATTCTCCTGTACCTAGTTCTAGAATGACTAGCCCCGGTCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCGAGAGCAGGAGCTCCACCTGCTGAGTCACAATCATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCCTCTCCATTTTCGCATTCGAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGAGAGATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTGAGGCATCCCAACATTGTGCAGTATTATGGTTCGGAAGCAGTGGGTGATAAATTCTATATATATCTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTTCAAGAGTATGGGCAATTTGGGGAACTAGCAATTCGTAACTATACTCAACAAATACTATCAGGACTTGCGTATTTGCATGCTAAAGCTACGGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCAAATGGTAAAGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACCGGCCAATCATGTCCACTATCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAAAACTCAAATGGTTGCAACCTTGCCGTTGATGTTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCCTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAGAGAACTCCCAGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTGAAACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTCTTGGAGCATCCTTTTGTCAAAAACGCTGCACCTATAGAGAGGCCTATTTTGAGCTCCGAGCCTTCGGATACAACTCCAGGAGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTATGGACTCGGATAGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGCTCTTCATGCCAGTGAAATCAATATTCCCAGAAACATATCATGTCCTGTTTCACCAATCGGAAGCCCTCTTTTGCATTCACGATCCCCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCTATTTCAAGTCCTCGAACCACTTCGGGCTCGTCCACACCTTTGACAGCATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATTCTTGCAAGATGGAATCGGAAGCATGCCAAAGTCCTTAAATAGTTGTCCATACAGCAGCGGTATCTCATTCCACGACTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATCTTCTCTGAAATGATACCAGAAAACGATATCTTGGGAAAGCAGGTTGGACGGCCTGCTTATGGTGAGTTGTATGATGGCCAGCAGGTCCTGGCTGACCGAGTATCTCGTAAGCTCTTACGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTAGCGCTACATTGTCTGGCCGCATGAATGGTATCTGA 2694 45.06 MPSWWGKSSSKEVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSRKCGGDTISEKGSKSPISRSPSPSKEVARCQSFAERSCSHKLPLPDLHPVGVGRTDSGISVTAKSKLERSSKTSLFLPLPRPACIRSRPDPADLDGDLVTGSVFGESSSDSDDPSDSRQRSPQATDYDIGARTVIGSTEASETLKDQSPTVVQINLKEGKKSESLPFPHKNSSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRIFSTEQVMNAAVWAGKSHPDVILAGSGPCSSPGSGHNSGHNSMGGDMAGHFFWQQSKGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQSCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSEAVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRNYTQQILSGLAYLHAKATVHRDIKGANILVDPNGKVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDVWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSRELPVIPEHLSDDGKDFVKLCLQRNPHHRPTAAQLLEHPFVKNAAPIERPILSSEPSDTTPGVTNGVKILGIGQSRTTSMDSDSRLAVHSSRVSKAALHASEINIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTACGGAIPYNHLKQAIFLQDGIGSMPKSLNSCPYSSGISFHDSNPDIFRGLQPGAHIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRKLLRDHVKTNPSLDLSPSATLSGRMNGI 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8845141 8850890 - CaPI482276_05g009780.1 Cam05g0978 126382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g0978 897 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 43 671 IPR050538 -
Cam05g0978 897 MobiDBLite consensus disorder prediction 371 403 - -
Cam05g0978 897 MobiDBLite consensus disorder prediction 285 412 - -
Cam05g0978 897 MobiDBLite consensus disorder prediction 313 340 - -
Cam05g0978 897 FunFam Mitogen-activated protein kinase kinase kinase 408 691 - -
Cam05g0978 897 MobiDBLite consensus disorder prediction 103 117 - -
Cam05g0978 897 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0978 897 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0978 897 MobiDBLite consensus disorder prediction 9 35 - -
Cam05g0978 897 SUPERFAMILY Protein kinase-like (PK-like) 408 755 IPR011009 -
Cam05g0978 897 MobiDBLite consensus disorder prediction 204 225 - -
Cam05g0978 897 CDD STKc_MEKK1_plant 409 666 - -
Cam05g0978 897 MobiDBLite consensus disorder prediction 1 176 - -
Cam05g0978 897 MobiDBLite consensus disorder prediction 745 776 - -
Cam05g0978 897 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524(InterPro)
Cam05g0978 897 MobiDBLite consensus disorder prediction 741 776 - -
Cam05g0978 897 SMART serkin_6 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g0978 897 Gene3D Transferase(Phosphotransferase) domain 1 408 685 - -
Cam05g0978 897 MobiDBLite consensus disorder prediction 36 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0469 Cam-Chr1:5010976 Cam05g0978 Cam-Chr5:8845141 0.00E+00 dispersed
Cam01g1580 Cam-Chr1:29279225 Cam05g0978 Cam-Chr5:8845141 8.10E-118 dispersed
Cam02g1641 Cam-Chr2:29418507 Cam05g0978 Cam-Chr5:8845141 4.00E-73 dispersed
Cam03g0931 Cam-Chr3:12289869 Cam05g0978 Cam-Chr5:8845141 7.30E-65 dispersed
Cam05g0511 Cam-Chr5:4563062 Cam05g0978 Cam-Chr5:8845141 2.30E-34 dispersed
Cam05g0978 Cam-Chr5:8845141 Cam08g2031 Cam-Chr8:25951119 2.30E-89 dispersed
Cam05g0978 Cam-Chr5:8845141 Cam01g1708 Cam-Chr1:30668315 4.10E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85178 PF00069 Pkinase 1.40E-71 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g0978 K20717 - csv:101214961 1594.71