Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1021 ATGGAGAATATGCAGTATGCTGAGGAGCTCGTGAGGGAGTTCCTTGTCTTTAGGGGGTTTACAACTTCTCTTCAATCTTATGAGAGTGAGCTGAGCACAGATGTCGGAAAAGGGTTCCAAGTGGACAAGATTTTGGATTTAATCTTCTCAATTTATATACCCAAATTTGAGGCAGGAAAGTTGGTGGGGCTACTAGGTTTTTTCAAGCAGTGCCTTGCTTCATCATCTGACAATACACTTCTTTCAACCATGTCAAAATTGGAGGTTTCCATCCTTCGTTATTATATGGTACATGCCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTTCTTAAACTAAATGGCAATGATCTACTGCAGAGGACTAAAGATTGGACTCCATGGTTTGCCATGCCGTACCTAAAGAATCCAAAGTTTGATCCCAACTTTCACGTTTATTTTACAAAGGAGTGGTATGAAGCGCTGCATGTTTCTGTAAGGAATTTCTTCAGCGAAGTCTTCAATGCTAAGATTAGGAGAATAGGAGCAGTACTTGGCATTCAAAATTTGAATATGTCTTTTCCTTTAAACTCTGTTTCTGCAGAACTCAGTTCAGAGAAGAATACAGTTAATCATCTGAAAAGAGATATCAAGCAGTTAAATCTTAAATTAGCACAACTTCAGGCTTTATTGGAGGAAAAGGAGGCTCATCTTTGCCACTTGAGAAGCCTGGTGAACAGTTCTTCAAGTGTGATGCACGAAGAGAATGCTACTTCATCAAATGATGCTCAGGAGACTTGTCCCCCTCCAACTACACAAGTTGGGGAAACACAACTGGCTCGAGATGGGGTTTTAGCTGGCTCTGACAAGTGTACTGCTTCAAATGAGGATTCAAGTTCTTTATTAACTATTTGCTCGGGAGACCGTGAAGTTGGTGATCCTAGTCATAGTTGTGAAGATGTTCGTCAAATGGTGAATAGCGGAGAAGTCCATGTACAAGAAGACTTCCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGTCGTTGCCGTTTTTCTGCATCTGGAAACAATGTAGCAAGTGCTTCTTTGGATGGTACAGTCAGGATATGGACATATGATTCGTCCACTCCAGCATCTAGAAATGCAACAATTTACTGTGGGGCAGAGATTATGTCACTTGACTGGGAGTGTAAATCCGATCGCCTACTTCTAATAGGCACAGCTGATGCGGGCATTAAAGCATGGAATGTTGATGCAAAGAGAGTTGTGTGTGATCTCAACACGACTGATATGTTCCCTAGCGTGTTGGATATCAAATGCAGTCCTGTTGAATCTATTTTCGTCTCTGCAGCAGCATCTAGAGGGCATGGTTCAAGTTATGTGGATAGTTTGGGGTTTGCTTCACTCACAGTATGGAACATGAGAACTTGGAAGTCAATGACAGTCCTTCCTCTGGGTAAGGATCCACCTGCAATCACTTCAATGTGCTTCAATCATAACGGGAAGATTTTAGCAGCTGCTGCTACTGATGGAATGATTCACATGTTTGACATGTCCGCTTGTCTACAAATTACAGGGTGGCCGGCACATGATTCTGCCATTAACTCAATTCTTTTCGGGCCGGATGAAACTAGCATTTTTACTTTAGGGTCAGATGGGAAGATATTTGAATGGAGCTTGCATAACCAAGGTCAAGTTCTGTGGTCAAGAAATAATAGCAGGTTTTGCGATTCTGAGAGCTCTCTGTCCTTGAGACATGAAATGGCTTTGGATGCAAATGGAAAAAGACTCTTGGCTACATCAAATTCAGTGAGAGCTCCCATATACCAGGTGGGTGGTCGTGTGGGCGGATTGAAAACTCTTCCACACACGGCAGCGATAACGACGGTTGATTGGCACCCAACTTTGCCTGTGTTCTTGACTGGATCTGCCGACCACTCAGTTCGAGTTACGTCTATTTCTTGA 1971 42.62 MENMQYAEELVREFLVFRGFTTSLQSYESELSTDVGKGFQVDKILDLIFSIYIPKFEAGKLVGLLGFFKQCLASSSDNTLLSTMSKLEVSILRYYMVHAIQSGRTDKVLEFLKLNGNDLLQRTKDWTPWFAMPYLKNPKFDPNFHVYFTKEWYEALHVSVRNFFSEVFNAKIRRIGAVLGIQNLNMSFPLNSVSAELSSEKNTVNHLKRDIKQLNLKLAQLQALLEEKEAHLCHLRSLVNSSSSVMHEENATSSNDAQETCPPPTTQVGETQLARDGVLAGSDKCTASNEDSSSLLTICSGDREVGDPSHSCEDVRQMVNSGEVHVQEDFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSSTPASRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPSVLDIKCSPVESIFVSAAASRGHGSSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTLGSDGKIFEWSLHNQGQVLWSRNNSRFCDSESSLSLRHEMALDANGKRLLATSNSVRAPIYQVGGRVGGLKTLPHTAAITTVDWHPTLPVFLTGSADHSVRVTSIS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9215976 9222682 + CaPI482276_05g010210.1 Cam05g1021 126425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1021 656 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 376 - -
Cam05g1021 656 Pfam Anaphase-promoting complex subunit 4 WD40 domain 486 540 IPR024977 -
Cam05g1021 656 SUPERFAMILY WD40 repeat-like 332 652 IPR036322 GO:0005515(InterPro)
Cam05g1021 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 656 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 SMART WD40_4 334 373 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 SMART WD40_4 520 561 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 SMART WD40_4 379 418 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 SMART WD40_4 616 654 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 SMART WD40_4 478 519 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 Pfam WD domain, G-beta repeat 621 652 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 Pfam WD domain, G-beta repeat 338 372 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 382 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 562 IPR001680 GO:0005515(InterPro)
Cam05g1021 656 MobiDBLite consensus disorder prediction 244 268 - -
Cam05g1021 656 Gene3D - 459 656 IPR015943 GO:0005515(InterPro)
Cam05g1021 656 Gene3D - 196 458 IPR015943 GO:0005515(InterPro)
Cam05g1021 656 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 656 - -
Cam05g1021 656 Coils Coil 190 231 - -
Cam05g1021 656 PANTHER OS05G0299300 PROTEIN 1 655 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1021 K24760 - - csv:101209643 1182.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32