Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1026 ATGGAGGCCATATGGAGTGTGTTCTGTGGAGGTTATGACTGTTCCAATGGTAGTGAGAAACCTTGTGGTTTTGACTATGACTTTCTTTCTCATTCCTCTCCATGTACAAGTCAAGCTCTGATCATCTGTTTTGATTTTCTACTGTTCATCTTGCTTGTATCCAATATCGTGGGGAAGTCAATGAAAAGAGTTCACATGTCGAATCGAATTCGTAACGGTTCAGGTTTGCTGATTTTTTCTGCTATCTTCAATGGCTGTGTTGGATTGGTGTACCTTGGCTTAGGCATTTGGACTTTGGTGGAGAAGTTGAGGAAAGATCACACTGCTTTGCCTTTGCAGCTGTGGTTATCAGCTTCCTTCCATGGCTTCACATGGTTGTTGGTGAGTTCTATTGTCAGCATATGGAGTAAACAGCTTCCAAGAGCCTTGTTGCGCCTATTGTCCATTGCGGCATTCGTGTTTGCTGGGGTTGTTTGTGTTCTTTCACTTTTTGATGCCGTTTCGAGTAAAATAGTATCGGCAAAGATGGTTTTGGATGTTCTATCTGTTCTGGGATCAGTTTTATTATTGCTTTGCTCTTTTGGTTGTTTTAGCTGCCAAGAGAGTGAGGAGAGTATCAATGGGAATGGACTTTACACCCCATTAATTGATGAGGCCAATGAAAGTGGTAAGCTTGATCCTGTAACTCCATTAGCCAAAGCTGGATTGCTGAGTAAAATTTCGTTTTGGTGGATGAATCCTTTAATGAAAAGGGGGAAGAAGAAGACTCTCAACAGTGAAGATATACCGATGATGCGTGAGGAAGATCGAGCAGAAAGTTGTTACTTACAGTTCATAAACCAAATGAACGAGCAGAAAAGAAAAGACCAAAGTTCTCAATCATCAGTCTTCAGAGTCATTCTTTCATGCCATCGGAGGGATATATTATTGTCAGGATTTTTCGCTTTGTTGAAAATACTCTTTCTTTCTGCTGGTCCTCTGCTTCTTAATGCCTTCATTTTGGTTGCTCAGGGACACCAAAGTTTCAAATACGAAGGTCTTGTGCTTGCCATTTCACTTTTCTTTTCAAAAAGCATTGAATCCATATCACAAAGACAATGGTATTTCAGAACCAGGCTTGTTGGTCTTAAAGTCAGGTCTTTGCTCTCAGCAGCCATTTATAAGAAGCAATTGCGATTGTCCAGTGAAGCTAAGTTGATGCACTCGAGTGGTGAAATCATGAACTACGTTACCGTAGACGCGTATAGGATTGGAGAATTCTCATTCTGGTTCCACCAAACTTGGACCACAAGCGTTCAGCTTTGTATTGCACTTTTGATCCTCTACAAAGCAGTGGGAATAGCAACCATAGCCTCCTTATTAGTGATAATTCTATGTGTAGTTGGGAATACTCCAATTGCCAAGCTACAACATAAGTATCAGAGTAAATTGATGGCGGCACAAGATGAGAGATTGAAGACATTTACAGAGGCCCTTGTAAACATGAAAGTGTTGAAGTTATATGCGTGGGAAACTCATTTCAAGAATGTAATTGAGAAGTTAAGAAAGGAGGAGCAGAGGTGGCTGTCAGCCGTGCAATTTCGAAAGGGATACAATGGCATTCTCTTTTGGTCGTCTCCTGTTATCGTCTCTGTTGCAACCTTCGGGGCATGTAGTTTTTTGAACATTCCCCTACATGCCAATAATGTCTTCACTTTCGTATCTGCATTGCGTCTTGTTCAAGAACCTGTCAGATCTATGGGTGATGTCGTTGCGGTGATCATTCAAGCAAGGGTCTCATTTACACGTATTATTAACTTTCTGGAGGCACCTGAGCTGCAAACTTCAAGTGTTCCTAGAAAGTGTGTGAAGATGAATAACGACTGCTCCATTCGGATCCGTTCAGCATCTTTCTCGTGGGAAGAGAATTCGACAAGGCCTACTCTTCGTGATATAAATCTAGAGGTCAAGCCAGGTTCAAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCTACTCTTCTAGCAGCCGTTCTTGGTGAAATTCCAAATGTTGAGGGAAATATTCAAGTTTATGGAAGGATTGCTTATGTGTCTCAAACGGCATGGATCCAAACAGGGTCCATACGAGATAACATTTTATTTGGCTCTGAAATGGACAATTGGAGATATCGAGAAACACTCGAGAAGTGTTCATTGGTGAAGGACCTCGAGTTACTTCCTTATGGTGATCTCACTGAGATTGGTGAAAGAGGAGTAAATCTCAGTGGTGGACAAAAGCAGAGGATTCAACTTGCTCGTGCGCTATATCAAAATGCCGACATATATCTTTTGGACGATCCATTTAGCGCTGTCGATGCTCATACTGCCACAAGTTTGTTCAATGGATATGTTATGGAAGCACTCTCGGGAAAAATGGTTCTTCTTGTGACTCATCAAGTCGATTTCCTGCCAGCTTTTGATTCTGTCCTGCTGATGTCTGATGGGGAAATTCTAAAAGCAGCTCCTTATGATCAGCTGTTGGCACATAGTAAAGAATTTCAGGAACTTGTCAATGCACACAAAGAGACTGCTGGAACTGAAAGGCTTGCAGATATATCTGCTACCAAGAGTTTGAGAACATCTAGTAAAGAAATTAAGAAATCTTTTACAGAGAAACTGTCTGTAGCTTCTGATGCTAATCAGATAATTAAGCAGGAGGAGCGAGAAGTTGGAGACTCAGGATTCAAGCCTTATATTCAGTATCTGAATCAGAACAAAGGGTTCTTCTTCTTCTCCTTAGATGTTTTCTCCCAATTAGCATTTGTGGCATGTGGAATAACTCAAAACTCTTGGATGGCTTCGAATGTCGATAATCCCAACATCAGCAACTCGCACTTGATCATAGTTTACTTGTTGATTGGAGTTACTTCAACATTATTTTTGGCTTCAAGATCTCTTTTAACAGCTGTTTTAGGTCTGCAATCATCAAAATCATTGTTTTCTCAGCTACTAACATCTCTTTTTCGTGCACCGATGTCCTTCTATGACTCCACACCTCTTGGAAGGATACTTAGTCGGGTCTCAATGGATCTTAGTATTGTGGATCTTGATGTCCCGTTTAGTTTGATATTTGCTGTGGGGGCAACCTCCAATGCCTATGCTGCTCTCGGAGTTTTAGCTGTAATCACGTGGCAAGTTCTATTCATCTCCATACCGACAATCATTTTGGCAGTTTGCTTGCAGAGATACTATTTCGCTTCTGCTAAAGAACTCATGCGTCTTAATGGGACAACAAAGTCAATGGTAGCGAACCATTTGTCCGAATCCATAGCTGGAGCAATGACAATTCGAGCTTTTGAAGAGGAAGAGCGATTCTTTAAGAAAAATCTTGAGTTTGTTGATGGAAATGCTAGTCCTTTCTTTCACAACTTTTCAGCCAATGAGTGGCTGATACAGCGGTTAGAAATGCTCAGCGCGGTTGTCCTTGCCTCCGCTGCATTTTGCATAGTATTGCTACCAACTGGAAGCTTCAGCCCTGGTTTCATTGGAATGGCACTCTCTTATGGCCTTTCTTTAAATGTGTCCCTGGTCTTCTCCATCCAGAATCAATGTAATATAGCCAATCACATTATTTCTGTAGAAAGATTAAACCAATACATGCATTTATCAAGTGAGGCTCCCGAAATCATTGAAGCTAACCGTCCCCCGACCAACTGGCCCTCTATTGGCAAAGTGGAGATAATTGACTTGAAGATTCGGTATAGACCAAATACACCCCTTGTTCTTCATGGTATTAGCTGCACATTTGAAGGAGGACATAAGATTGGTATTGTTGGTCGGACTGGCAGTGGGAAATCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCAGGAGGAAAGATTTTAGTTGATGATATCGACATCTGCTCGATTGGACTTCATGACCTGCGTTCACGTTTTGGAATTATACCTCAAGATCCAACCCTTTTTAAAGGGTCTGTTCGATACAATTTGGATCCCTTAGTCCAGCATACCGATGATGAAATATGGGAGGTACTCGGAAAGTGTCAACTTAGAGAGGTTGTCGAAGAGAGAGAGGCGGGATTGGATTCCTTGGTTGTGGAAGATGGTTCAAACTGGAGCATGGGACAGCGACAACTTTTCTGTTTAGGTCGTGCACTTTTGAGGAGAAGTCGAATATTGGTGCTTGATGAAGCAACTGCATCAATCGACAATGCCACCGATATGATTCTGCAGAAAACTATTAGATCTGAATTCGCAGACTGTACTGTAATTACAGTTGCTCACAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATAAGTGATGGGAGAATAGCAGAATACGACGAACCGACCACATTGATCAAGAGAGAAGGCTCCCTATTTGGACAGTTAGTCAAAGAATACTGGTCTCACTCACCATCTGCAGGATTATTTTGA 4440 41.71 MEAIWSVFCGGYDCSNGSEKPCGFDYDFLSHSSPCTSQALIICFDFLLFILLVSNIVGKSMKRVHMSNRIRNGSGLLIFSAIFNGCVGLVYLGLGIWTLVEKLRKDHTALPLQLWLSASFHGFTWLLVSSIVSIWSKQLPRALLRLLSIAAFVFAGVVCVLSLFDAVSSKIVSAKMVLDVLSVLGSVLLLLCSFGCFSCQESEESINGNGLYTPLIDEANESGKLDPVTPLAKAGLLSKISFWWMNPLMKRGKKKTLNSEDIPMMREEDRAESCYLQFINQMNEQKRKDQSSQSSVFRVILSCHRRDILLSGFFALLKILFLSAGPLLLNAFILVAQGHQSFKYEGLVLAISLFFSKSIESISQRQWYFRTRLVGLKVRSLLSAAIYKKQLRLSSEAKLMHSSGEIMNYVTVDAYRIGEFSFWFHQTWTTSVQLCIALLILYKAVGIATIASLLVIILCVVGNTPIAKLQHKYQSKLMAAQDERLKTFTEALVNMKVLKLYAWETHFKNVIEKLRKEEQRWLSAVQFRKGYNGILFWSSPVIVSVATFGACSFLNIPLHANNVFTFVSALRLVQEPVRSMGDVVAVIIQARVSFTRIINFLEAPELQTSSVPRKCVKMNNDCSIRIRSASFSWEENSTRPTLRDINLEVKPGSKVAICGEVGSGKSTLLAAVLGEIPNVEGNIQVYGRIAYVSQTAWIQTGSIRDNILFGSEMDNWRYRETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVMEALSGKMVLLVTHQVDFLPAFDSVLLMSDGEILKAAPYDQLLAHSKEFQELVNAHKETAGTERLADISATKSLRTSSKEIKKSFTEKLSVASDANQIIKQEEREVGDSGFKPYIQYLNQNKGFFFFSLDVFSQLAFVACGITQNSWMASNVDNPNISNSHLIIVYLLIGVTSTLFLASRSLLTAVLGLQSSKSLFSQLLTSLFRAPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFAVGATSNAYAALGVLAVITWQVLFISIPTIILAVCLQRYYFASAKELMRLNGTTKSMVANHLSESIAGAMTIRAFEEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAAFCIVLLPTGSFSPGFIGMALSYGLSLNVSLVFSIQNQCNIANHIISVERLNQYMHLSSEAPEIIEANRPPTNWPSIGKVEIIDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKILVDDIDICSIGLHDLRSRFGIIPQDPTLFKGSVRYNLDPLVQHTDDEIWEVLGKCQLREVVEEREAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRSEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPTTLIKREGSLFGQLVKEYWSHSPSAGLF 1479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9245968 9251889 - CaPI482276_05g010260.1 Cam05g1026 126430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1026 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam05g1026 1479 Gene3D - 1217 1468 IPR027417 -
Cam05g1026 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1468 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cam05g1026 1479 SUPERFAMILY ABC transporter transmembrane region 301 605 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam05g1026 1479 SUPERFAMILY ABC transporter transmembrane region 921 1216 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam05g1026 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Cam05g1026 1479 SMART AAA_5 651 824 IPR003593 GO:0016887(InterPro)
Cam05g1026 1479 SMART AAA_5 1259 1451 IPR003593 GO:0016887(InterPro)
Cam05g1026 1479 Gene3D - 603 869 IPR027417 -
Cam05g1026 1479 Gene3D ABC transporter type 1, transmembrane domain 279 602 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam05g1026 1479 Gene3D ABC transporter type 1, transmembrane domain 883 1214 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam05g1026 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam05g1026 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam05g1026 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1467 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam05g1026 1479 Pfam ABC transporter transmembrane region 919 1176 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam05g1026 1479 Pfam ABC transporter transmembrane region 309 576 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam05g1026 1479 FunFam ABC transporter C family member 5 883 1214 - -
Cam05g1026 1479 CDD ABCC_MRP_domain1 624 824 - -
Cam05g1026 1479 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359(InterPro)
Cam05g1026 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 954 1196 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam05g1026 1479 FunFam ABC transporter C family member 10 608 860 - -
Cam05g1026 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam05g1026 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 847 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam05g1026 1479 FunFam ABC transporter C family member 3 1216 1468 - -
Cam05g1026 1479 FunFam ABC transporter C family member 10 292 605 - -
Cam05g1026 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 847 IPR027417 -
Cam05g1026 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1460 IPR027417 -
Cam05g1026 1479 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1026 K05666 - - csv:101210136 2663.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1026 Cam-Chr5:9245968 Cam09g0050 Cam-Chr9:1426733 0.00E+00 dispersed
Cam05g1026 Cam-Chr5:9245968 Cam09g0584 Cam-Chr9:5798752 6.50E-278 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48