Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1028 ATGATGAAGAATAGCTTCATTTTCCTTGAAATATTATTGTTTTTAGCATTCATATGGCCGGGGGTTTTCACTGAGCCAGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAACTGGAATGAGAGTAGTTCTGTGTGCAAATCCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCCAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTGCGTGGCCCGATCCCTGCGAATACTCTTAGCCGCCTAACTGCGCTTGAGATTCTAAGCCTTAGGTTGAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTCAAAGCTGGAAAGTTTGAATTCCTTGTATCTGCAATACAACAAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAGTTTGGAATAACCTCAGTGTCATTGATCTATCGAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTTTGAATCTTGCAAACAACTCATTTTCAGGCGAAATTCCGAACCTTGATATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCCGGTAACAATGTTACTCAAGAACATAGTGCAATTCCCCCATCTTTTCCTCTCCAGCCTCCCACTGCTCAACCGACAGGAAAAGGCAAAGGACTGAGTCAATCTGCAATACTTGGTATTGCAATTGGTAGTTCAGTTATTGGGTTTATTTTGCTAGCTGTTTTGTTGACTGCTTGCTGGTTGAAAAAACGAAAGGAAAATATGAGTTCCCCCATGGAGCCCAAAAAGAAGGAAGCGTCTGTGAAGAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTTGGGAAGGGAACCTTTGGAGTGAGCTACAAAGCAGCTTTGGAAGACTCAATGACTGTCGTAGTGAAGAGGCTGAATCAAGTGACAACGGTTGGAAAACGAGAATTTGAACAGCAGATGCAGTTGATTGGAAATATTAAGCACGAGAACGTTGTTTCCTTAAGAGCATACTATTATTCAAAGGACGAGAAACTCATGGTCTATGACTACTATGAACAAGGGAGTGTGTCTGCAATGTTACATGGTAAGGAAGGAGATGGTTTACATGTGTTAGATTGGGATACTCGGATGAAAATTGCTATTGGAGCAGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAATGTTCCCATGGAAACGTCAGAGCTTCAAACATTTTCCTCAACTCTAAAGGATATGGTTGTGTATCCGACGTTGGCTTGGCTGCGTTGATGAATTCAATTCTACTACCAGCCACAAGAACCCCAGGTTACCGAGCGCCTGAATTGACCGACACTCGAAGAGTATCACACGCAGCTGATGTCTACAGTTTCGGGGTGGTGTTGCTGGAGCTTCTGACTGGAAAATCTCCCATACATGTAGAAGGTTGTAATGAAGTTGTTAATTTGGTGAAGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACGGCAGAAGTGTTTGATGTTGAGCTTCTCAGGTATCCAAACATAGAAGAAGAGATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAGCAAAGGCCAAAAATGACAGATATAATGTCGAGAATCGAGCAAGTTCGACAACACAGTACAGGAACCCAACCGTCATCGGGGTCAAAATCAGCGTATTCAACTCCCGTTCATGGTCCCACAAGCAGAAACGGTTCTATAAAATTCATTCCGCACCAAATCACCATTAGTTTTCCATCTCCTTCGTCGTTTCTCATCCTCATCCTCTCTTCGTCTTCTTCACAACAAACCCTCACACCAGACCTAAAGCGCCTTCACGAGAACCTCTCTCTTGATTTTTCTTAG 2034 43.07 MMKNSFIFLEILLFLAFIWPGVFTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKSWTGVFCNSDESRVVALRLPGTGLRGPIPANTLSRLTALEILSLRLNRISGPFPFDFSKLESLNSLYLQYNKFSGPLPLDFSVWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTQEHSAIPPSFPLQPPTAQPTGKGKGLSQSAILGIAIGSSVIGFILLAVLLTACWLKKRKENMSSPMEPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSMTVVVKRLNQVTTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYEQGSVSAMLHGKEGDGLHVLDWDTRMKIAIGAARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLAALMNSILLPATRTPGYRAPELTDTRRVSHAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVKWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMTDIMSRIEQVRQHSTGTQPSSGSKSAYSTPVHGPTSRNGSIKFIPHQITISFPSPSSFLILILSSSSSQQTLTPDLKRLHENLSLDFS 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9281237 9285588 + CaPI482276_05g010280.1 Cam05g1028 126432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1028 677 FunFam pollen receptor-like kinase 1 296 402 - -
Cam05g1028 677 MobiDBLite consensus disorder prediction 599 623 - -
Cam05g1028 677 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 403 610 - -
Cam05g1028 677 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Cam05g1028 677 ProSiteProfiles Protein kinase domain profile. 327 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1028 677 Pfam Protein tyrosine and serine/threonine kinase 331 595 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1028 677 SUPERFAMILY Protein kinase-like (PK-like) 331 596 IPR011009 -
Cam05g1028 677 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Cam05g1028 677 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Cam05g1028 677 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
Cam05g1028 677 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Cam05g1028 677 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cam05g1028 677 PANTHER OS05G0588300 PROTEIN 10 613 IPR050994 -
Cam05g1028 677 Gene3D Ribonuclease Inhibitor 27 234 IPR032675 -
Cam05g1028 677 Gene3D Transferase(Phosphotransferase) domain 1 403 617 - -
Cam05g1028 677 FunFam Probable inactive receptor kinase RLK902 26 185 - -
Cam05g1028 677 SUPERFAMILY L domain-like 38 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1028 Cam-Chr5:9281237 Cam11g0283 Cam-Chr11:4305745 3.90E-121 dispersed
Cam01g0211 Cam-Chr1:2408086 Cam05g1028 Cam-Chr5:9281237 1.20E-167 wgd
Cam01g0065 Cam-Chr1:985272 Cam05g1028 Cam-Chr5:9281237 1.70E-158 wgd
Cam05g1028 Cam-Chr5:9281237 Cam06g1783 Cam-Chr6:28985209 6.40E-39 wgd
Cam05g1028 Cam-Chr5:9281237 Cam07g1496 Cam-Chr7:29585541 1.20E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85182 PF07714 PK_Tyr_Ser-Thr 1.30E-34 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1028 - - - 0.0