Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1029 ATGGCGTCGAAGAGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGACCCGCCTACATCATGTAGCGCTGGTCCAGTTGCCGAAGACATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATTCATTTTCCTCCGGATTATCCTTTTAAGCCTCCTAAGGTGGCATTCAGAACAAAGGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCCCTAACTATTTCCAAGGTCTTACTTTCAATCTGTTCACTGTTGACGGATCCAAATCCGGATGACCCGCTCGTGCCTGAGATCGCTCATATGTACAAGACTGACAGGAACAAATATGAGACAACCGCTAGGAGCTGGACGCAGAAGTATGCGATGGGCTAA 447 47.2 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9285598 9288440 + CaPI482276_05g010290.1 Cam05g1029 126433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1029 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Cam05g1029 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Cam05g1029 148 CDD UBCc 3 142 IPR000608 -
Cam05g1029 148 FunFam Ubiquitin-conjugating enzyme 28, E2 1 148 - -
Cam05g1029 148 SMART ubc_7 4 147 - -
Cam05g1029 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Cam05g1029 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Cam05g1029 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Cam05g1029 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 5 137 - GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0006511(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1029 K06689 - - rcu:8277046 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2469 Cam-Chr2:37138802 Cam05g1029 Cam-Chr5:9285598 3.90E-47 dispersed
Cam04g0633 Cam-Chr4:20344701 Cam05g1029 Cam-Chr5:9285598 1.70E-82 dispersed
Cam05g0133 Cam-Chr5:1579929 Cam05g1029 Cam-Chr5:9285598 2.20E-56 dispersed
Cam05g1029 Cam-Chr5:9285598 Cam09g1031 Cam-Chr9:10711272 2.90E-77 dispersed
Cam02g0439 Cam-Chr2:5100364 Cam05g1029 Cam-Chr5:9285598 7.30E-81 transposed
Cam02g0569 Cam-Chr2:6487070 Cam05g1029 Cam-Chr5:9285598 2.40E-22 transposed
Cam02g2377 Cam-Chr2:36294514 Cam05g1029 Cam-Chr5:9285598 1.10E-25 transposed
Cam04g0496 Cam-Chr4:18234863 Cam05g1029 Cam-Chr5:9285598 5.70E-23 transposed
Cam05g2651 Cam-Chr5:33991350 Cam05g1029 Cam-Chr5:9285598 1.20E-34 transposed
Cam01g1656 Cam-Chr1:30129431 Cam05g1029 Cam-Chr5:9285598 2.40E-19 transposed
Cam05g2290 Cam-Chr5:31001775 Cam05g1029 Cam-Chr5:9285598 3.60E-24 transposed
Cam01g0210 Cam-Chr1:2398349 Cam05g1029 Cam-Chr5:9285598 2.90E-84 wgd
Cam01g0063 Cam-Chr1:975076 Cam05g1029 Cam-Chr5:9285598 6.60E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251