Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1039 ATGGAGAATTTTGTGGAACGGGATCAAAACAAGCTCAAAAATGAGCTGCTTAAAGGCAAGGAATTAGCAAAGCAACTCCAAATTCATCTCAATATGAGACCATCCCCATCATCCATGGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTTCAAATGATAATGGTGGTGAATTATTAGTTCAAAAGATTTTATGTTCATATGAAAAGGCACTGTCTTTGCTCAACTCAAATGGAATCCAAATATCTGAATCTCCTTCATCTCTTAATGGAGGAAGTCCAAGAAGTGAAGACTCTGACCGTGAATTCAAGGACCTATTTGATCAAACAAATGCTAATTCTTCCCGCAGAAGGAACATTCTTCCAATTTGGACACAGAAATTCCAAGTTAGTCCAGGGATGGCCCTTGAAGGCTCTCTTGATGATGGCTTCTGCTGGAGGAAATATGGTCAGAAAGGCATTCTTGGTGCCAAACATCCAAGGGGGTACTATAGATGCACATACAGGAACCTCCAAGGTTGTCTTGCAACCAAACAAGTTCAACGGTCCGATGACGATCCGACCGTCTTTGAAATCACGTACAGAGGAAAGCATAGTTGCAGCCAAGTTTCCAATCTTAGTACTCCATCTACAACGACACCAAAGTTTCAGCAACAAAACCAACAAACATCACCTGATGCTCTCTTGAACTCATGGGCATCCTTAAGAGTCATAACTCAAAACCTTGACACAACAATTCATGAAACCCCAACATTGTCATTTCATTACGACGCGGCAGACCGTGTCGAAACGTCGACTGTGGATGTCAACTTTGCCGAGTTTTCTCCATGTTCTTCATTTATGTCTCCAACAACATCTGGTTCTGGGTTGAGCTATTGGTCTGCCTCATCAAGTGGGTTGAGTGAAGGAATTGTTGGGAATCAGAAGTTGGATTTGCAACCAAACAAATGTGAGATTTTTTCGTCACCAACTTCAGCTTTGGACTCTGAAGCTCCTGCCTTAGACTTCCCATTTGGTGACCTTCAATTGGACCCAACTTTCACATTTGACGACACCAATTTCTTCTCCTAA 1080 41.85 MENFVERDQNKLKNELLKGKELAKQLQIHLNMRPSPSSMAASSSSSSSSSSSSFSNDNGGELLVQKILCSYEKALSLLNSNGIQISESPSSLNGGSPRSEDSDREFKDLFDQTNANSSRRRNILPIWTQKFQVSPGMALEGSLDDGFCWRKYGQKGILGAKHPRGYYRCTYRNLQGCLATKQVQRSDDDPTVFEITYRGKHSCSQVSNLSTPSTTTPKFQQQNQQTSPDALLNSWASLRVITQNLDTTIHETPTLSFHYDAADRVETSTVDVNFAEFSPCSSFMSPTTSGSGLSYWSASSSGLSEGIVGNQKLDLQPNKCEIFSSPTSALDSEAPALDFPFGDLQLDPTFTFDDTNFFS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9398431 9399834 - CaPI482276_05g010390.1 Cam05g1039 126443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1039 359 SUPERFAMILY WRKY DNA-binding domain 142 205 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1039 359 Gene3D WRKY domain 137 205 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1039 359 MobiDBLite consensus disorder prediction 206 225 - -
Cam05g1039 359 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 229 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam05g1039 359 Pfam WRKY DNA -binding domain 144 203 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1039 359 FunFam WRKY transcription factor 53 129 206 - -
Cam05g1039 359 MobiDBLite consensus disorder prediction 34 55 - -
Cam05g1039 359 ProSiteProfiles WRKY domain profile. 138 202 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1039 359 SMART WRKY_cls 143 205 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1039 Cam-Chr5:9398431 Cam09g0938 Cam-Chr9:9639344 4.90E-30 dispersed
Cam07g0531 Cam-Chr7:7725549 Cam05g1039 Cam-Chr5:9398431 1.90E-20 transposed
Cam05g0115 Cam-Chr5:1424026 Cam05g1039 Cam-Chr5:9398431 4.10E-34 wgd
Cam05g1039 Cam-Chr5:9398431 Cam07g1519 Cam-Chr7:29797360 8.60E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51918 PF03106 WRKY 1.70E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1039 - - - 0.0