Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1043 ATGGTATGCAGCTACAATATAAGGAATGTGATTGCTCAGGCTGGACGTATAGGAATAATCAATAGACGGGTCCAAATCAACAATATCTGGAGTAGTTTGCCTTCCAATCTTGGATTTGTTCACACCTGGAAGCGTGAATATAGAACAAGTCTCATGATGATGGTAGATACGGGTGCATCGGAAAATCGTGGGCCGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATACCAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTCGATGGTCAAACCGTCTGCCTTTTTGGCATCTTTGATGGTCACGGTGGATCACGAGCTGCAGAGTTTCTGAAGGACCATCTCTTTGAGAATCTGATGAAGCACCCAAAATTTTTGATGGATACCAAATTAGCTATCAGTGAAACATATCAACAGACGGATGCTGAATTTTTAAATTCGGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTGGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTACTATTATATCAAAGGGGGGTGAAGCGATCCCTCTTTCCGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGCGCTTTCGGTAACAAGATGTTGAAGCAGTTTGTTGTGGCGGATCCTGATATTCAGGATCTTGAAGTAGACAAGGACATCGAGTTGCTTGTTCTGGCAAGTGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCAGGGAAGGAAGATGAACCAGAGGCAGCTGCTCGGAAGCTAACTGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATCGTGGTGAAGTTTCATCATGACAATGCAGGTCCTGCTGCAGATACTCGAGAAAACAACTAA 1062 45.1 MVCSYNIRNVIAQAGRIGIINRRVQINNIWSSLPSNLGFVHTWKREYRTSLMMMVDTGASENRGPVVDKHPEKDEDGGYTSGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKVDGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEDEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAADTRENN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9434930 9438987 - CaPI482276_05g010430.1 Cam05g1043 126447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1043 353 Gene3D - 84 343 IPR036457 -
Cam05g1043 353 SUPERFAMILY PP2C-like 88 339 IPR036457 -
Cam05g1043 353 PANTHER PROTEIN PHOSPHATASE 78 337 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam05g1043 353 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Cam05g1043 353 ProSiteProfiles PPM-type phosphatase domain profile. 92 338 IPR001932 -
Cam05g1043 353 Pfam Protein phosphatase 2C 96 331 IPR001932 -
Cam05g1043 353 CDD PP2Cc 94 338 IPR001932 -
Cam05g1043 353 MobiDBLite consensus disorder prediction 62 83 - -
Cam05g1043 353 MobiDBLite consensus disorder prediction 63 81 - -
Cam05g1043 353 SMART PP2C_SIG_2 90 338 IPR001932 -
Cam05g1043 353 FunFam Probable protein phosphatase 2C 76 84 344 - -
Cam05g1043 353 SMART PP2C_4 82 336 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1043 Cam-Chr5:9434930 Cam11g1437 Cam-Chr11:27092904 4.00E-53 dispersed
Cam05g1043 Cam-Chr5:9434930 Cam05g1049 Cam-Chr5:9518755 8.50E-35 proximal
Cam03g0062 Cam-Chr3:1570863 Cam05g1043 Cam-Chr5:9434930 6.50E-44 transposed
Cam05g1766 Cam-Chr5:26427285 Cam05g1043 Cam-Chr5:9434930 6.70E-93 transposed
Cam07g0443 Cam-Chr7:6121747 Cam05g1043 Cam-Chr5:9434930 2.60E-37 transposed
Cam08g1080 Cam-Chr8:17139833 Cam05g1043 Cam-Chr5:9434930 2.00E-87 transposed
Cam08g2235 Cam-Chr8:27550129 Cam05g1043 Cam-Chr5:9434930 6.30E-36 transposed
Cam10g1608 Cam-Chr10:29868606 Cam05g1043 Cam-Chr5:9434930 3.70E-36 transposed
Cam11g0846 Cam-Chr11:11170124 Cam05g1043 Cam-Chr5:9434930 3.80E-39 transposed
Cam05g1043 Cam-Chr5:9434930 Cam06g0726 Cam-Chr6:9822708 4.80E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1043 K17506 - csv:101203681 691.419