Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1044 ATTGATTCAACTCATATTGAGGTGGTGATTCTGATAATGAGAGGTTCGAGATCCTTGAATACGAAGGACTTGCTGAAACATGCTGTATTATGTCAATTTGTGCCAAGCTTTCTTCGAATCTATCCACTGTACAAAGAAGTTACAAGGACCTCGGGCATACTCATTGAAACAGCTTGGGCAGGAGCTGCATTTAATCTCTTTCTCTACATGCTAGCTGGCCACGTATTTGGGGCAATCTGTAATGAAGGGAATCTATTCCTCACTGTTATGTGCCCTTCCGCCAAAAAGGCAAATATAGGACCTTTTGACTTTGGAATATTCATTCAAGCCCTTCAACCTGATATTGTGGAGTCGGATTTTCCGAAGAAGTTCCTTCACGGCTTCTGGTGGGGCTTGAGGAATCTAAGCTGTTTGGGGCAAAATCTTACTACAAGTCCTTGCACATGGGAAAACTGCTTTGCCATTTTCGTTTGCGTGTCTGGCTTAGTGTTGTTCGCATCTCTCCTAGGCAACGTGCAGATGTATTGGCGATCCACAAACACAAGAGTGGAGGAGATGAGATTGAGAAGGAAAGATGTTGAAGAATGGATGTCATGTCGCTTACTCCCTGAGAATCTGAGGGTGCGGGTTCGTGGATTTGCTCATGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTGGACGCGATGTGTGCTCGTCTCAAGCCAGTGCTGTACACACAAAGCTGCATTGTTTGGGAAGGCGATCCAGTTGATGAGATGCTCTTCATAATGAGGGGCAAGCTCTTAACCATGACTACAAATGGTGGGAGAACTGGATTCTTCAACTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTATTGACTTGGGCTCTAGACCCTCATTCCTCAACCAATCTCCCTATTTCAACTCGAACTGCCCAATCTCTAACGAAAGTCGAAGCATTTGCTTTTGAATCCAACGACTTGAAATTTGTAGCCTCTCAATACCACAGACTTCACAGCAAGCAGCCCGTGCGCCGTCGCCTCCGCCATCCGCCGGCCGCGTCTGCGTTTTTCGCTGGTTGCAAGCTTCCGGCCGTCGTGAGCCGTTCTACCTTCCAACCGCCGGATTCCGTCGGTATTAAATTATTTTGGTCTTTATTCGAGAATTTTGTGAAAATTGGCGGTTTTGATAGCTATTTGGACGTAAGCCCAAGGTAA 1212 45.79 IDSTHIEVVILIMRGSRSLNTKDLLKHAVLCQFVPSFLRIYPLYKEVTRTSGILIETAWAGAAFNLFLYMLAGHVFGAICNEGNLFLTVMCPSAKKANIGPFDFGIFIQALQPDIVESDFPKKFLHGFWWGLRNLSCLGQNLTTSPCTWENCFAIFVCVSGLVLFASLLGNVQMYWRSTNTRVEEMRLRRKDVEEWMSCRLLPENLRVRVRGFAHVPMFEKMDEQLLDAMCARLKPVLYTQSCIVWEGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSDFLMAGDFCGEELLTWALDPHSSTNLPISTRTAQSLTKVEAFAFESNDLKFVASQYHRLHSKQPVRRRLRHPPAASAFFAGCKLPAVVSRSTFQPPDSVGIKLFWSLFENFVKIGGFDSYLDVSPR 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9450486 9463236 + CaPI482276_05g010440.1 Cam05g1044 126448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1044 403 Gene3D Jelly Rolls 216 335 IPR014710 -
Cam05g1044 403 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 79 - -
Cam05g1044 403 SUPERFAMILY Voltage-gated potassium channels 35 207 - -
Cam05g1044 403 CDD CAP_ED 218 345 IPR000595 -
Cam05g1044 403 SUPERFAMILY cAMP-binding domain-like 213 336 IPR018490 -
Cam05g1044 403 SMART cnmp_10 218 348 IPR000595 -
Cam05g1044 403 ProSiteProfiles cAMP/cGMP binding motif profile. 218 301 IPR000595 -
Cam05g1044 403 FunFam Cyclic nucleotide-gated ion channel 1 216 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1044 Cam-Chr5:9450486 Cam10g1213 Cam-Chr10:25495479 8.90E-89 dispersed
Cam05g1044 Cam-Chr5:9450486 Cam05g1045 Cam-Chr5:9471366 4.50E-64 tandem
Cam01g0049 Cam-Chr1:868856 Cam05g1044 Cam-Chr5:9450486 3.30E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1044 K05391 - csv:101214911 540.036